Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0452
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21470.1 68417.m03105 riboflavin kinase/FAD synthetase family...    62   5e-10
At4g31610.1 68417.m04490 transcriptional factor B3 family protei...    28   6.8  
At3g54900.1 68416.m06084 CAX-interacting protein 1 (CAXIP1) iden...    27   9.0  
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ...    27   9.0  

>At4g21470.1 68417.m03105 riboflavin kinase/FAD synthetase family
           protein contains Pfam profiles PF01687: Riboflavin
           kinase / FAD synthetase, PF00702: haloacid
           dehalogenase-like hydrolase
          Length = 379

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 31/76 (40%), Positives = 43/76 (56%)
 Frame = +2

Query: 320 PFFLEGEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPVYEMVAN 499
           P+ + G V+KGFGRGSK LG PTAN   +           GVY+GWA +    V++MV +
Sbjct: 238 PWHIGGPVIKGFGRGSKVLGIPTANLSTKDYADELVEHPSGVYFGWAGLAKRGVFKMVMS 297

Query: 500 IGWVLFTKIKRCLLKP 547
           IGW  +   K   ++P
Sbjct: 298 IGWNPYFNNKEKTIEP 313



 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 19/44 (43%), Positives = 32/44 (72%)
 Frame = +1

Query: 511 PFYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYLRGEKNFNCL 642
           P++ NKE ++E  ++H+F  DFYG  L++ ++GY+R E NF+ L
Sbjct: 302 PYFNNKEKTIEPWLLHDFTEDFYGEELRLIIVGYIRPEANFSSL 345


>At4g31610.1 68417.m04490 transcriptional factor B3 family protein /
           reproductive meristem protein 1 (REM1) similar to
           reproductive meristem gene 1 from [Brassica oleracea
           var. botrytis] GI:3170424; contains Pfam profile
           PF02362: B3 DNA binding domain; identical to cDNA
           reproductive meristem protein 1 (REM1) GI:13604226
          Length = 517

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 25/79 (31%), Positives = 37/79 (46%)
 Frame = +2

Query: 347 KGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPVYEMVANIGWVLFTKI 526
           KG  R  K+  C TA  P  V K+   G+E  VY    QVD    +  V+N    +   +
Sbjct: 394 KGNQRTRKKRACETAPQPRNVKKTPRLGVEGPVY----QVDEERGHTQVSNRTNTISGNL 449

Query: 527 KRCLLKPI*CTISRVISMV 583
           +R L  P  C++S  ++ V
Sbjct: 450 QRLL--PPSCSVSDQVANV 466


>At3g54900.1 68416.m06084 CAX-interacting protein 1 (CAXIP1)
           identical to cDNA CAXIP1 protein (CAXIP1) GI:27752304,
           CAXIP1 protein [Arabidopsis thaliana] GI:27752305
          Length = 173

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 550 IMHNFQGDFYGSNLKI 597
           ++HN Q  FYGSNLK+
Sbjct: 40  VVHNHQLSFYGSNLKL 55


>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 766

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 3/25 (12%)
 Frame = -2

Query: 511 DPSYICY---HLIYRSCVNLSPSII 446
           DPSY C+   +++++SC+NL P +I
Sbjct: 361 DPSYACFQCNYMVHQSCINL-PRVI 384


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,913,788
Number of Sequences: 28952
Number of extensions: 319437
Number of successful extensions: 678
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)