Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0451
         (396 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42156| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_9486| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.3  
SB_41296| Best HMM Match : RVT_1 (HMM E-Value=2.8e-24)                 26   9.6  

>SB_42156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 81  TLPTKSKGEFTKNGS*PCFNKDCFLV 4
           T+PT  KG++  N + P  +K+CF +
Sbjct: 470 TVPTLDKGKYALNVTVPTLDKECFAI 495


>SB_9486| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 81  TLPTKSKGEFTKNGS*PCFNKDCFLV 4
           T+PT  KG++  + + P  +K+CF +
Sbjct: 50  TVPTLDKGKYAHDVTVPTLDKECFAI 75


>SB_41296| Best HMM Match : RVT_1 (HMM E-Value=2.8e-24)
          Length = 568

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 126 CNADCTDIITLGARYTLPT 70
           CN D T+I+ + +R+T PT
Sbjct: 550 CNPDKTEIVHISSRFTSPT 568


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,878,294
Number of Sequences: 59808
Number of extensions: 163120
Number of successful extensions: 246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)