Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0450
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   4.7  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    26   6.3  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   8.3  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   8.3  

>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 387 LKYFNTSKLGVLTSHALVPIVRFSISFL 470
           L  F TS    LT H+L P+  F +SFL
Sbjct: 595 LSLFKTSS-STLTLHSLEPLCEFCVSFL 621


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -2

Query: 303 NAVLPFLIYKTVISKAVFVSCLL 235
           ++++ FL+YK+V+SK  F+  L+
Sbjct: 25  SSLILFLVYKSVLSKLFFIKYLM 47


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 487 RVTSPLRKEIEKRTIGTKACDVSTPNFDVLKYFRRFKD 374
           R  +P  KE+ K     +   + +PNFD  ++ + FKD
Sbjct: 233 RFLNPREKELMKIRAEQRQKYMGSPNFDWTQFRKAFKD 270


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 81  QVSFLKKSDKERSLNENLSSQLFCTLNSIN 170
           Q  FLKKSDKER+   NL+  +     SIN
Sbjct: 333 QSPFLKKSDKERA---NLNKTMVSINKSIN 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,005
Number of Sequences: 5004
Number of extensions: 48578
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)