Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0450
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199...    31   0.93 

>04_04_0706 +
           27419215-27419371,27419521-27419734,27419818-27419913,
           27420006-27420123,27420211-27420384,27420633-27420803,
           27420932-27420987,27421125-27421214,27421296-27421444,
           27421640-27421722,27421830-27421958,27422063-27422137,
           27422248-27422416,27422965-27423104,27423191-27423298,
           27423603-27423783,27424445-27424542,27424639-27424728,
           27424881-27425034,27425376-27425431,27425483-27425533,
           27425651-27425732,27425821-27425995,27426748-27426823,
           27426951-27427121,27427198-27427269,27427350-27427454,
           27427948-27428037,27428703-27428908,27428989-27429190,
           27429294-27429473,27429858-27429925,27430005-27430341,
           27430428-27430637,27430765-27431448,27431537-27431940,
           27432495-27432542,27432777-27433023,27433381-27433602,
           27433796-27434026
          Length = 2122

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 185 RFLNNINNTDTLMVLVLSRHDTNTALLITVL*IKNGSTAFRFNKTVRDRLAP 340
           R+L ++ N D L++  L  HDT+T + I  L I  G++ + F   V+   AP
Sbjct: 122 RYLVHVYNLDELLLCALPYHDTHTFVRIVQL-INLGNSKWAFLDAVKSSGAP 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,124,091
Number of Sequences: 37544
Number of extensions: 273764
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)