Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0450
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)           30   2.2  
SB_46012| Best HMM Match : Pigment_DH (HMM E-Value=1.5)                29   5.0  
SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)                 28   8.8  

>SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)
          Length = 1224

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 28/98 (28%), Positives = 50/98 (51%)
 Frame = -2

Query: 474  PSEKKSKSVQLVLKRVTSAPLILMY*SILDVLKTRWNLVHPISKCGASLSLTVLLNLNAV 295
            PS+ K     L+ +R+    LI++Y SI D L  +  L +    C    S+ +L + +  
Sbjct: 1085 PSDVKYWESVLIGRRLL---LIVIYVSIQDALARQIALTY----C----SVLILFHHSFA 1133

Query: 294  LPFLIYKTVISKAVFVSCLLNTSTIKVSVLFILLRNLI 181
            LPF  +K  +++AV + CL+    + V  + +L + LI
Sbjct: 1134 LPFREFKANMAEAVSLLCLITIGFVNVKPVCLLNQFLI 1171


>SB_46012| Best HMM Match : Pigment_DH (HMM E-Value=1.5)
          Length = 265

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 9/47 (19%), Positives = 28/47 (59%)
 Frame = -2

Query: 321 TVLLNLNAVLPFLIYKTVISKAVFVSCLLNTSTIKVSVLFILLRNLI 181
           TV++N   V   ++Y  +++ A+  + ++NT+ +  +++  ++ N +
Sbjct: 58  TVIVNTVIVNTLIVYTAIVNTAIVKTAIVNTAIVNTAIVNTVIVNTV 104


>SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)
          Length = 314

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 406 DVLKYFRRFKDTMEPCPPY 350
           DVL+   RF DT   CPPY
Sbjct: 266 DVLRTLERFFDTRVACPPY 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,144,530
Number of Sequences: 59808
Number of extensions: 341352
Number of successful extensions: 821
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)