Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0450
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z83112-1|CAB05538.1|  742|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF125964-3|ABA03110.1|  805|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF047655-2|ABD63245.1|  805|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF025465-10|AAB71023.1|  805|Caenorhabditis elegans Hypothetical...    28   5.9  
AF016422-2|AAG24174.1|  805|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC024831-3|ABD63213.1|  805|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical ...    28   5.9  

>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -2

Query: 321 TVLLNLNAVLPFLIYKTVISKAVFVSCLLNTSTIKV--SVLFILLRNLI 181
           T L  LN+ L F IY T+   ++F+S L++   I +   V F L + LI
Sbjct: 483 TALGYLNSSLNFFIYSTINPVSIFISNLISKKIIFLIFQVQFALYKTLI 531


>Z83112-1|CAB05538.1|  742|Caenorhabditis elegans Hypothetical
           protein K02B7.1 protein.
          Length = 742

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 6   DPPGLQVIFKLFSLILTLNC*FSKRQVSFLKKSDKERSLNENLSSQLFCTLN-SINQINQ 182
           D P  ++++    L  + +C F   Q +  K +D+  +L ENL+     T+N  + Q NQ
Sbjct: 355 DDPARRIVYNQCGLRSSGSCNFCLNQETECKINDEYTTLRENLTGSCPSTMNDGLRQRNQ 414


>AF125964-3|ABA03110.1|  805|Caenorhabditis elegans Hypothetical
           protein W03G1.4 protein.
          Length = 805

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 6   DPPGLQVIFKLFSLILTLNC*FSKRQVSFLKKSDKERSLNENLSSQLFCTLN-SINQINQ 182
           D P  ++++    L  + +C F   Q +  K +D+  +L ENL+     T+N  + Q NQ
Sbjct: 355 DDPARRIVYNQCGLRSSGSCNFCLNQETECKINDEYTTLRENLTGSCPSTMNDGLRQRNQ 414


>AF047655-2|ABD63245.1|  805|Caenorhabditis elegans Hypothetical
           protein C17B7.7 protein.
          Length = 805

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 6   DPPGLQVIFKLFSLILTLNC*FSKRQVSFLKKSDKERSLNENLSSQLFCTLN-SINQINQ 182
           D P  ++++    L  + +C F   Q +  K +D+  +L ENL+     T+N  + Q NQ
Sbjct: 355 DDPARRIVYNQCGLRSSGSCNFCLNQETECKINDEYTTLRENLTGSCPSTMNDGLRQRNQ 414


>AF025465-10|AAB71023.1|  805|Caenorhabditis elegans Hypothetical
           protein K02E7.3 protein.
          Length = 805

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 6   DPPGLQVIFKLFSLILTLNC*FSKRQVSFLKKSDKERSLNENLSSQLFCTLN-SINQINQ 182
           D P  ++++    L  + +C F   Q +  K +D+  +L ENL+     T+N  + Q NQ
Sbjct: 355 DDPARRIVYNQCGLRSSGSCNFCLNQETECKINDEYTTLRENLTGSCPSTMNDGLRQRNQ 414


>AF016422-2|AAG24174.1|  805|Caenorhabditis elegans Hypothetical
           protein R09E12.6 protein.
          Length = 805

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 6   DPPGLQVIFKLFSLILTLNC*FSKRQVSFLKKSDKERSLNENLSSQLFCTLN-SINQINQ 182
           D P  ++++    L  + +C F   Q +  K +D+  +L ENL+     T+N  + Q NQ
Sbjct: 355 DDPARRIVYNQCGLRSSGSCNFCLNQETECKINDEYTTLRENLTGSCPSTMNDGLRQRNQ 414


>AC024831-3|ABD63213.1|  805|Caenorhabditis elegans Hypothetical
           protein Y55F3C.6 protein.
          Length = 805

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 6   DPPGLQVIFKLFSLILTLNC*FSKRQVSFLKKSDKERSLNENLSSQLFCTLN-SINQINQ 182
           D P  ++++    L  + +C F   Q +  K +D+  +L ENL+     T+N  + Q NQ
Sbjct: 355 DDPARRIVYNQCGLRSSGSCNFCLNQETECKINDEYTTLRENLTGSCPSTMNDGLRQRNQ 414


>AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical
           protein Y5H2B.4 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/66 (33%), Positives = 35/66 (53%)
 Frame = -2

Query: 393 ILDVLKTRWNLVHPISKCGASLSLTVLLNLNAVLPFLIYKTVISKAVFVSCLLNTSTIKV 214
           + + L T+ N+  P +    S S    L+  AV  FL+Y+TVI K  FV+     +T KV
Sbjct: 232 LFEKLVTQKNIFTPRNL--GSYSTVTKLSGCAVEAFLVYRTVIRKQDFVN---EATTSKV 286

Query: 213 SVLFIL 196
           S + ++
Sbjct: 287 SSILVV 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,279,527
Number of Sequences: 27780
Number of extensions: 261424
Number of successful extensions: 540
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)