Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0450
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.7  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   6.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 315  LLNLNAVLPFLIYKTVISKAVFVSCLL 235
            + NLN V+P +    VI  AV V C+L
Sbjct: 1582 MANLNLVVPVVAAILVIIVAVIVICVL 1608


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 105 DKERSLNENLSSQLFCTLNSINQINQ 182
           DK+ + NE++S ++     + N+INQ
Sbjct: 74  DKDGNFNEHVSREIAKIFLNENEINQ 99


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 457 EKRTIGTKACDVSTPNFDVLKYFRRFKD 374
           EKR +G   CD       V+K F+ FKD
Sbjct: 416 EKRIMGEADCDF------VVKLFKTFKD 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,729
Number of Sequences: 438
Number of extensions: 3193
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)