Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0450
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5) M...    33   0.25 
At5g15240.1 68418.m01785 amino acid transporter family protein l...    30   1.4  
At3g18215.1 68416.m02317 expressed protein contains Pfam profile...    28   7.2  

>At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5)
           Monovalent cation:proton antiporter family 2 (CPA2
           family) member, PMID:11500563; related to
           glutathione-regulated potassium-efflux system protein
           [Escherichia coli] GP|606284|gb|AAA58147
          Length = 568

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 20/68 (29%), Positives = 36/68 (52%)
 Frame = -2

Query: 390 LDVLKTRWNLVHPISKCGASLSLTVLLNLNAVLPFLIYKTVISKAVFVSCLLNTSTIKVS 211
           L+   T+  +V P++  G  L + +L+ L  V   L+    +S+ +FV   L+ S+  V 
Sbjct: 221 LEFSMTKLKVVGPVAVLGGLLQIVLLMFLCGVTA-LLCGARLSEGIFVGAFLSMSSTAVV 279

Query: 210 VLFILLRN 187
           V F++ RN
Sbjct: 280 VKFLVERN 287


>At5g15240.1 68418.m01785 amino acid transporter family protein low
           similarity to amino acid transporter system A3 [Homo
           sapiens] GI:13876616; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 423

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 474 PSEKKSKSVQLVLKRVTS-APLILMY*SILDVLKTRWNLVHPISKCGASLSLTVLLNLNA 298
           P++K S  V +    V   A   LM   I+D +++R++ V P  +    L  T+L+  N 
Sbjct: 288 PTDKLSSKVAIWTTLVNPIAKFALMVTPIIDAMRSRFSRVLPNKRASGFLLSTILVTSNV 347

Query: 297 VLPFLI 280
           ++  L+
Sbjct: 348 IVALLL 353


>At3g18215.1 68416.m02317 expressed protein contains Pfam profile
           PF04654: Protein of unknown function, DUF599
          Length = 244

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 638 SVTPCSSLRIEVVSSSIDISTANNHVYGS 724
           ++T CS + + V +SS   STA N +YGS
Sbjct: 82  AITLCSIIGVFVSNSSSSKSTATNLIYGS 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,300,553
Number of Sequences: 28952
Number of extensions: 237615
Number of successful extensions: 402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)