Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0449
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.52 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.8  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   6.4  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   6.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 105  SVPSHRSNITARVTCSSPPLKIQNQ 179
            S  S+ +N+T  +T   PP+K+Q+Q
Sbjct: 951  SSASNVTNVTTNLTTILPPVKVQSQ 975


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 155 SAAKDSKPNVWWSLNGERLGTFNG 226
           SAA +  P V W+L+G  L T NG
Sbjct: 444 SAAGNPTPQVTWALDGFALPT-NG 466


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 155 SAAKDSKPNVWWSLNGERLGTFNG 226
           SAA +  P V W+L+G  L T NG
Sbjct: 444 SAAGNPTPQVTWALDGFALPT-NG 466


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 336 CNTQIQLFCKNMQLQLXCISSC 401
           C+ + Q FC N+  +  CI  C
Sbjct: 46  CDGRCQRFCPNVVPKPLCIKIC 67


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 336 CNTQIQLFCKNMQLQLXCISSC 401
           C+ + Q FC N+  +  CI  C
Sbjct: 46  CDGRCQRFCPNVVPKPLCIKIC 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,676
Number of Sequences: 438
Number of extensions: 3894
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)