Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0448
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.64 
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    26   6.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   7.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAP 544
           PP   GS     P P P  R +  G +   P+G  A P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = +2

Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSP-PGDVTGXPKGVEAAPHATV-TLARWHQEDG 586
           P+GA   P    S     P PA M    P P      P     AP A V ++A   Q+DG
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDG 499

Query: 587 TA 592
            A
Sbjct: 500 RA 501



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 428 PPPSSRGSEEGVCPAPAPMRRQSPP 502
           PPP  R +  G  P P P  R +PP
Sbjct: 339 PPPPPRSNAAGSIPLP-PQGRSAPP 362


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 180 PPLQWLQRGHGGA 218
           P L W QRG+GGA
Sbjct: 341 PDLDWTQRGYGGA 353


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 413  PLGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAP 544
            P+ AV P   +     V  APAP    +PP  V+  P  V   P
Sbjct: 1451 PMHAVAPVQPKAPGM-VTNAPAPSSAPAPPAPVSQLPPAVPNVP 1493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,992
Number of Sequences: 5004
Number of extensions: 43024
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)