Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0448
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     30   2.1  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              30   2.1  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   2.8  
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)                   29   4.8  
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_46120| Best HMM Match : Transformer (HMM E-Value=3.2)               28   8.4  
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_29421| Best HMM Match : N_methyl (HMM E-Value=0.58)                 28   8.4  
SB_3896| Best HMM Match : 7tm_1 (HMM E-Value=0.00045)                  28   8.4  
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_21990| Best HMM Match : DUF828 (HMM E-Value=1.4)                    28   8.4  

>SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 271 FATRTRAAPRKRCSTRACAPPCPRCSH 191
           F + +R  PR R S RACAP  P+ SH
Sbjct: 615 FVSCSRWWPRGRASRRACAPTMPKASH 641


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQ--SPPGDVTGXPKGVEAAP 544
           PL A PPP     ++   P P P+R Q   PP  ++  P    +AP
Sbjct: 313 PLNATPPPPPPSRDQVPLP-PPPLRGQIAPPPPPISKPPTSTRSAP 357


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQ--SPPGDVTGXPKGVEAAP 544
           PL A PPP     ++   P P P+R Q   PP  ++  P    +AP
Sbjct: 225 PLNATPPPPPPSRDQVPLP-PPPLRGQIAPPPPPISKPPTSTRSAP 269


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 419 GAVPPPSSRGSEEGVCPAPAPMRRQSPP 502
           GA PPP SRG+     P P P R  +PP
Sbjct: 294 GAAPPPPSRGA-----PPPPPSRGSAPP 316



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
 Frame = +2

Query: 419 GAVPPPSSRGS-------EEGVCPAPAPMRR--QSPPGDVTGXP 523
           GA PPP SRGS         G  P P P  R  Q PP    G P
Sbjct: 303 GAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRGAP 346


>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
          Length = 300

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 232 CTAFAE-QRASSLQK*DRTCRFRPSWLRCSAVTSPG 336
           CTA  + Q+ ++  K D TC+ +P W       SPG
Sbjct: 228 CTAHCKCQKNATCDKIDGTCQCKPGWTGIDCECSPG 263


>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +2

Query: 428 PPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPK---GVEAAPHATV 556
           PPP +      + P P P +  +PPG  T  P    G  A PH  +
Sbjct: 95  PPPPATPPPPTMPPTPPPPQTPAPPGPDTPAPPAPGGCGAKPHTRI 140


>SB_46120| Best HMM Match : Transformer (HMM E-Value=3.2)
          Length = 436

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 616 HRSPQPPTRRPVLLVPA---R*SDGSVRRSLNPLRXPRD 509
           +R P  P RRP  + P+   R +  + RRS  P+  PRD
Sbjct: 168 NRLPATPARRPAAVTPSRSPRSASRTNRRSQGPVPSPRD 206


>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +2

Query: 416 LGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDV--TGXPKGVEAAPHA 550
           +G  PPP +        PAP P +   PP  +  T  P  V +A  A
Sbjct: 303 VGEAPPPPAASEPAAFAPAPPPSQAPPPPKTIPSTLPPPPVPSATSA 349


>SB_29421| Best HMM Match : N_methyl (HMM E-Value=0.58)
          Length = 534

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 177 VPPLQWLQRGHGGAHARVLHRFRGAARVLVAKIGPDLSLPTVVATMLG 320
           +PP+  L  GH  A + V    R  +R+L AK+ P      +V+ + G
Sbjct: 346 LPPIATLPAGHHTAESIVETINRAESRILTAKLDPPTGKIALVSRVAG 393


>SB_3896| Best HMM Match : 7tm_1 (HMM E-Value=0.00045)
          Length = 538

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 130 PTLQLWLVKNLCVVKRRTIFGFARGRLWSNRNHTKK 23
           P + L L K+   + + +I G   G +  NRNHT+K
Sbjct: 481 PLIYLMLTKHSRALFKSSITGKRNGSMDKNRNHTRK 516


>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -1

Query: 531 TPLGXPVTSPGGDCLLIGAGAGQTPSSDPRLDGGGTAP 418
           TPL   VT PGG  L+     G T  +DP    GGT P
Sbjct: 896 TPLS--VTDPGGHTLISNGSGGHTLRTDP----GGTHP 927


>SB_21990| Best HMM Match : DUF828 (HMM E-Value=1.4)
          Length = 415

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +3

Query: 87  LTTHKFLTNHNCRVGTGV*KLRRPEXAD--AEVPPLQWLQRGHGGAHARVLHRFRGAARV 260
           +T  +F+    C +      L R +     A +PP+  L  GH  A + V    R  +++
Sbjct: 21  ITRPRFVALRQCSLFNSWYNLERGQQITTIASLPPIATLPAGHHTAESIVETINRAESKI 80

Query: 261 LVAKIGPDLSLPTVVAT 311
           L AK+ P      +V+T
Sbjct: 81  LTAKLDPLTGKIVLVST 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,586,980
Number of Sequences: 59808
Number of extensions: 434702
Number of successful extensions: 1588
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)