Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0448
(702 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC107786-1|AAI07787.1| 575|Homo sapiens BCL2-associated athanog... 33 0.99
BC014656-1|AAH14656.1| 575|Homo sapiens BCL2-associated athanog... 33 0.99
BC006418-1|AAH06418.1| 575|Homo sapiens BCL2-associated athanog... 33 0.99
AL137582-1|CAB70824.1| 616|Homo sapiens hypothetical protein pr... 33 0.99
AK222800-1|BAD96520.1| 575|Homo sapiens BCL2-associated athanog... 33 0.99
AF127139-1|AAF26839.1| 575|Homo sapiens Bcl-2-binding protein B... 33 0.99
AF095193-1|AAD16122.2| 575|Homo sapiens BAG-family molecular ch... 33 0.99
AF071218-1|AAF69592.2| 575|Homo sapiens docking protein CAIR-1 ... 33 0.99
BC052559-1|AAH52559.1| 184|Homo sapiens Cbp/p300-interacting tr... 33 1.3
BC035496-1|AAH35496.1| 184|Homo sapiens Cbp/p300-interacting tr... 33 1.3
AF466291-1|AAL73989.1| 184|Homo sapiens transcriptional co-acti... 33 1.3
AF362074-1|AAK64235.1| 184|Homo sapiens MRG2 protein. 33 1.3
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ... 32 1.7
AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein. 32 1.7
DQ533874-1|ABF83431.1| 1378|Homo sapiens ROBO2 isoform b protein. 32 2.3
DQ533873-1|ABF83430.1| 1394|Homo sapiens ROBO2 isoform a protein. 32 2.3
BC146772-1|AAI46773.1| 1378|Homo sapiens roundabout, axon guidan... 32 2.3
AK074780-1|BAC11205.1| 570|Homo sapiens protein ( Homo sapiens ... 32 2.3
AF040991-1|AAC39576.1| 285|Homo sapiens roundabout 2 protein. 32 2.3
AB046788-1|BAB13394.1| 1380|Homo sapiens KIAA1568 protein protein. 32 2.3
Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase... 31 5.3
U75308-1|AAC50901.1| 947|Homo sapiens TBP-associated factor pro... 31 5.3
AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 31 5.3
AL137077-3|CAI11046.1| 949|Homo sapiens TAF4 RNA polymerase II,... 31 5.3
AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 31 5.3
AL109911-3|CAI19183.1| 949|Homo sapiens TAF4 RNA polymerase II,... 31 5.3
AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 31 5.3
D14695-1|BAA03521.1| 391|Homo sapiens KIAA0025 protein. 30 7.0
DQ837586-1|ABI18163.1| 275|Homo sapiens homocysteine-inducible ... 30 7.0
CR457116-1|CAG33397.1| 391|Homo sapiens HERPUD1 protein. 30 7.0
BC032673-1|AAH32673.1| 391|Homo sapiens homocysteine-inducible,... 30 7.0
BC008320-1|AAH08320.1| 391|Homo sapiens homocysteine-inducible,... 30 7.0
BC000086-1|AAH00086.1| 391|Homo sapiens homocysteine-inducible,... 30 7.0
AK223233-1|BAD96953.1| 391|Homo sapiens homocysteine-inducible,... 30 7.0
AF217990-1|AAG17233.1| 209|Homo sapiens unknown protein. 30 7.0
AF055003-1|AAC09357.1| 356|Homo sapiens unknown protein. 30 7.0
AF055001-1|AAC09355.1| 391|Homo sapiens unknown protein. 30 7.0
AB034990-1|BAB19010.1| 391|Homo sapiens stress protein Herp pro... 30 7.0
AB034989-1|BAB07891.1| 391|Homo sapiens stress protein Herp pro... 30 7.0
BC092520-1|AAH92520.1| 1441|Homo sapiens KIAA0194 protein protein. 30 9.2
BC059362-1|AAH59362.1| 902|Homo sapiens RALGDS protein protein. 30 9.2
BC021290-1|AAH21290.1| 598|Homo sapiens insulin-like growth fac... 30 9.2
BC009326-1|AAH09326.2| 595|Homo sapiens SCARF2 protein protein. 30 9.2
AY358209-1|AAQ88576.1| 168|Homo sapiens YPLR6490 protein. 30 9.2
AY007790-1|AAG23285.1| 418|Homo sapiens p47 protein. 30 9.2
AL162417-12|CAI13417.1| 859|Homo sapiens ral guanine nucleotide... 30 9.2
AL162417-11|CAI13415.1| 914|Homo sapiens ral guanine nucleotide... 30 9.2
AL162417-10|CAI13416.1| 902|Homo sapiens ral guanine nucleotide... 30 9.2
AK127524-1|BAC87018.1| 913|Homo sapiens protein ( Homo sapiens ... 30 9.2
AK090450-1|BAC03431.1| 625|Homo sapiens FLJ00371 protein protein. 30 9.2
AK074114-1|BAB84940.1| 824|Homo sapiens FLJ00185 protein protein. 30 9.2
AK000096-1|BAA90942.1| 418|Homo sapiens protein ( Homo sapiens ... 30 9.2
AF522196-1|AAN45861.1| 870|Homo sapiens scavenger receptor type... 30 9.2
AF295775-1|AAG10221.1| 211|Homo sapiens ral guanine nucleotide ... 30 9.2
AF295773-1|AAG02122.1| 914|Homo sapiens ral guanine nucleotide ... 30 9.2
AF237585-1|AAG00911.1| 346|Homo sapiens recombinant IgG3 heavy ... 30 9.2
AF180298-1|AAQ13674.1| 418|Homo sapiens transcriptional regulat... 30 9.2
AF117107-1|AAD09827.1| 598|Homo sapiens IGF-II mRNA-binding pro... 30 9.2
AF074968-1|AAG12172.1| 418|Homo sapiens p47ING3 protein protein. 30 9.2
AF057352-1|AAD31596.1| 556|Homo sapiens hepatocellular carcinom... 30 9.2
AF027169-1|AAQ13414.1| 859|Homo sapiens Ral guanine nucleotide ... 30 9.2
AC004537-1|AAQ93373.1| 418|Homo sapiens unknown protein. 30 9.2
AB052951-1|BAC53753.1| 866|Homo sapiens SRECRP-1 protein. 30 9.2
AB037729-1|BAA92546.1| 745|Homo sapiens KIAA1308 protein protein. 30 9.2
AB024433-1|BAD93345.1| 866|Homo sapiens NSR1 protein. 30 9.2
>BC107786-1|AAI07787.1| 575|Homo sapiens BCL2-associated athanogene
3 protein.
Length = 575
Score = 33.1 bits (72), Expect = 0.99
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSP-PGDVTGXPKGVEAAPHATVTLA 565
P+ PPP S E V PAP P SP P V PK V A + A
Sbjct: 350 PVSQKPPPPSEKVEVKVPPAPVPCPPPSPGPSAVPSSPKSVATEERAAPSTA 401
>BC014656-1|AAH14656.1| 575|Homo sapiens BCL2-associated athanogene
3 protein.
Length = 575
Score = 33.1 bits (72), Expect = 0.99
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSP-PGDVTGXPKGVEAAPHATVTLA 565
P+ PPP S E V PAP P SP P V PK V A + A
Sbjct: 350 PVSQKPPPPSEKVEVKVPPAPVPCPPPSPGPSAVPSSPKSVATEERAAPSTA 401
>BC006418-1|AAH06418.1| 575|Homo sapiens BCL2-associated athanogene
3 protein.
Length = 575
Score = 33.1 bits (72), Expect = 0.99
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSP-PGDVTGXPKGVEAAPHATVTLA 565
P+ PPP S E V PAP P SP P V PK V A + A
Sbjct: 350 PVSQKPPPPSEKVEVKVPPAPVPCPPPSPGPSAVPSSPKSVATEERAAPSTA 401
>AL137582-1|CAB70824.1| 616|Homo sapiens hypothetical protein
protein.
Length = 616
Score = 33.1 bits (72), Expect = 0.99
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSP-PGDVTGXPKGVEAAPHATVTLA 565
P+ PPP S E V PAP P SP P V PK V A + A
Sbjct: 391 PVSQKPPPPSEKVEVKVPPAPVPCPPPSPGPSAVPSSPKSVATEERAAPSTA 442
>AK222800-1|BAD96520.1| 575|Homo sapiens BCL2-associated athanogene
3 variant protein.
Length = 575
Score = 33.1 bits (72), Expect = 0.99
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSP-PGDVTGXPKGVEAAPHATVTLA 565
P+ PPP S E V PAP P SP P V PK V A + A
Sbjct: 350 PVSQKPPPPSEKVEVKVPPAPVPCPPPSPGPSAVPSSPKSVATEERAAPSTA 401
>AF127139-1|AAF26839.1| 575|Homo sapiens Bcl-2-binding protein BIS
protein.
Length = 575
Score = 33.1 bits (72), Expect = 0.99
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSP-PGDVTGXPKGVEAAPHATVTLA 565
P+ PPP S E V PAP P SP P V PK V A + A
Sbjct: 350 PVSQKPPPPSEKVEVKVPPAPVPCPPPSPGPSAVPSSPKSVATEERAAPSTA 401
>AF095193-1|AAD16122.2| 575|Homo sapiens BAG-family molecular
chaperone regulator-3 protein.
Length = 575
Score = 33.1 bits (72), Expect = 0.99
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSP-PGDVTGXPKGVEAAPHATVTLA 565
P+ PPP S E V PAP P SP P V PK V A + A
Sbjct: 350 PVSQKPPPPSEKVEVKVPPAPVPCPPPSPGPSAVPSSPKSVATEERAAPSTA 401
>AF071218-1|AAF69592.2| 575|Homo sapiens docking protein CAIR-1
protein.
Length = 575
Score = 33.1 bits (72), Expect = 0.99
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSP-PGDVTGXPKGVEAAPHATVTLA 565
P+ PPP S E V PAP P SP P V PK V A + A
Sbjct: 350 PVSQKPPPPSEKVEVKVPPAPVPCPPPSPGPSAVPSSPKSVATEERAAPSTA 401
>BC052559-1|AAH52559.1| 184|Homo sapiens Cbp/p300-interacting
transactivator, with Glu/Asp-rich carboxy-terminal
domain, protein.
Length = 184
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 407 FFPLGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHA 550
F P AVPPP++ + P P R +PP + G P G + AP A
Sbjct: 73 FQPFPAVPPPAAGIAHLQPVATPYPGRAAAPP-NAPGGPPGPQPAPSA 119
>BC035496-1|AAH35496.1| 184|Homo sapiens Cbp/p300-interacting
transactivator, with Glu/Asp-rich carboxy-terminal
domain, protein.
Length = 184
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 407 FFPLGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHA 550
F P AVPPP++ + P P R +PP + G P G + AP A
Sbjct: 73 FQPFPAVPPPAAGIAHLQPVATPYPGRAAAPP-NAPGGPPGPQPAPSA 119
>AF466291-1|AAL73989.1| 184|Homo sapiens transcriptional
co-activator CITED4 protein.
Length = 184
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 407 FFPLGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHA 550
F P AVPPP++ + P P R +PP + G P G + AP A
Sbjct: 73 FQPFPAVPPPAAGIAHLQPVATPYPGRAAAPP-NAPGGPPGPQPAPSA 119
>AF362074-1|AAK64235.1| 184|Homo sapiens MRG2 protein.
Length = 184
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 407 FFPLGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHA 550
F P AVPPP++ + P P R +PP + G P G + AP A
Sbjct: 73 FQPFPAVPPPAAGIAHLQPVATPYPGRAAAPP-NAPGGPPGPQPAPSA 119
>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
marker CA125 protein.
Length = 22152
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 410 FPLGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAP 544
FP V P SRG E+ P+P + + SPP + +P
Sbjct: 9405 FPQSVVTTPMSRGPEDVSWPSPLSVEKNSPPSSLVSSSSVTSPSP 9449
>AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.
Length = 6995
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 410 FPLGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAP 544
FP V P SRG E+ P+P + + SPP + +P
Sbjct: 1109 FPRSVVTTPMSRGPEDVSWPSPLSVEKNSPPSSLVSSSSVTSPSP 1153
>DQ533874-1|ABF83431.1| 1378|Homo sapiens ROBO2 isoform b protein.
Length = 1378
Score = 31.9 bits (69), Expect = 2.3
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +3
Query: 177 VPPLQWLQRGHG--GAHARVLHRFRGAARVLVAKIGPDLSLPTVVATMLGSDESWQAMLD 350
+P + WL+ G G R + +G ++ +I D T VAT + SW A+LD
Sbjct: 446 LPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRIS-DTGTYTCVATSSSGETSWSAVLD 504
Query: 351 FCES--TISQ 374
ES TIS+
Sbjct: 505 VTESGATISK 514
>DQ533873-1|ABF83430.1| 1394|Homo sapiens ROBO2 isoform a protein.
Length = 1394
Score = 31.9 bits (69), Expect = 2.3
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +3
Query: 177 VPPLQWLQRGHG--GAHARVLHRFRGAARVLVAKIGPDLSLPTVVATMLGSDESWQAMLD 350
+P + WL+ G G R + +G ++ +I D T VAT + SW A+LD
Sbjct: 462 LPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRIS-DTGTYTCVATSSSGETSWSAVLD 520
Query: 351 FCES--TISQ 374
ES TIS+
Sbjct: 521 VTESGATISK 530
>BC146772-1|AAI46773.1| 1378|Homo sapiens roundabout, axon guidance
receptor, homolog 2 (Drosophila) protein.
Length = 1378
Score = 31.9 bits (69), Expect = 2.3
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +3
Query: 177 VPPLQWLQRGHG--GAHARVLHRFRGAARVLVAKIGPDLSLPTVVATMLGSDESWQAMLD 350
+P + WL+ G G R + +G ++ +I D T VAT + SW A+LD
Sbjct: 446 LPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRIS-DTGTYTCVATSSSGETSWSAVLD 504
Query: 351 FCES--TISQ 374
ES TIS+
Sbjct: 505 VTESGATISK 514
>AK074780-1|BAC11205.1| 570|Homo sapiens protein ( Homo sapiens
cDNA FLJ90299 fis, clone NT2RP2000514, highly similar to
Homo sapiens roundabout 2 (robo2) mRNA. ).
Length = 570
Score = 31.9 bits (69), Expect = 2.3
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +3
Query: 177 VPPLQWLQRGHG--GAHARVLHRFRGAARVLVAKIGPDLSLPTVVATMLGSDESWQAMLD 350
+P + WL+ G G R + +G ++ +I D T VAT + SW A+LD
Sbjct: 167 LPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRIS-DTGTYTCVATSSSGETSWSAVLD 225
Query: 351 FCES--TISQ 374
ES TIS+
Sbjct: 226 VTESGATISK 235
>AF040991-1|AAC39576.1| 285|Homo sapiens roundabout 2 protein.
Length = 285
Score = 31.9 bits (69), Expect = 2.3
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +3
Query: 177 VPPLQWLQRGHG--GAHARVLHRFRGAARVLVAKIGPDLSLPTVVATMLGSDESWQAMLD 350
+P + WL+ G G R + +G ++ +I D T VAT + SW A+LD
Sbjct: 124 LPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRIS-DTGTYTCVATSSSGEASWSAVLD 182
Query: 351 FCES--TISQ 374
ES TIS+
Sbjct: 183 VTESGATISK 192
>AB046788-1|BAB13394.1| 1380|Homo sapiens KIAA1568 protein protein.
Length = 1380
Score = 31.9 bits (69), Expect = 2.3
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +3
Query: 177 VPPLQWLQRGHG--GAHARVLHRFRGAARVLVAKIGPDLSLPTVVATMLGSDESWQAMLD 350
+P + WL+ G G R + +G ++ +I D T VAT + SW A+LD
Sbjct: 448 LPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRIS-DTGTYTCVATSSSGETSWSAVLD 506
Query: 351 FCES--TISQ 374
ES TIS+
Sbjct: 507 VTESGATISK 516
>Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase II
transcription factor protein.
Length = 1083
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 422 AVPPPSS--RGSEEGVCPAPAPMRRQSPPGDVTGXP-KGVEAAPHA 550
AVPPP++ G G PAPAP P V+G P G AA A
Sbjct: 294 AVPPPAAAQNGGSAGAAPAPAP--AAGGPAGVSGQPGPGAAAAAPA 337
>U75308-1|AAC50901.1| 947|Homo sapiens TBP-associated factor
protein.
Length = 947
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 422 AVPPPSS--RGSEEGVCPAPAPMRRQSPPGDVTGXP-KGVEAAPHA 550
AVPPP++ G G PAPAP P V+G P G AA A
Sbjct: 158 AVPPPAAAQNGGSAGAAPAPAP--AAGGPAGVSGQPGPGAAAAAPA 201
>AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 422 AVPPPSS--RGSEEGVCPAPAPMRRQSPPGDVTGXP-KGVEAAPHA 550
AVPPP++ G G PAPAP P V+G P G AA A
Sbjct: 296 AVPPPAAAQNGGSAGAAPAPAP--AAGGPAGVSGQPGPGAAAAAPA 339
>AL137077-3|CAI11046.1| 949|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 949
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 422 AVPPPSS--RGSEEGVCPAPAPMRRQSPPGDVTGXP-KGVEAAPHA 550
AVPPP++ G G PAPAP P V+G P G AA A
Sbjct: 160 AVPPPAAAQNGGSAGAAPAPAP--AAGGPAGVSGQPGPGAAAAAPA 203
Score = 30.3 bits (65), Expect = 7.0
Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Frame = +2
Query: 326 RVLAGDARLLRVHHLAXXXXXXXXXXLFFPLGAVP-PPSSRGSEEGVCPAPAPMRRQSPP 502
+ L G A LL HH A P +P P + + P PAP PP
Sbjct: 92 QTLNGSAALLNSHHAAAPAVSLVNNG---PAALLPLPKPAAPAAAPPPPPPAPATLARPP 148
Query: 503 GDVTGXPKGVEAAP 544
G G P A P
Sbjct: 149 GHPAGPPTAAPAVP 162
>AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 422 AVPPPSS--RGSEEGVCPAPAPMRRQSPPGDVTGXP-KGVEAAPHA 550
AVPPP++ G G PAPAP P V+G P G AA A
Sbjct: 296 AVPPPAAAQNGGSAGAAPAPAP--AAGGPAGVSGQPGPGAAAAAPA 339
>AL109911-3|CAI19183.1| 949|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 949
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 422 AVPPPSS--RGSEEGVCPAPAPMRRQSPPGDVTGXP-KGVEAAPHA 550
AVPPP++ G G PAPAP P V+G P G AA A
Sbjct: 160 AVPPPAAAQNGGSAGAAPAPAP--AAGGPAGVSGQPGPGAAAAAPA 203
Score = 30.3 bits (65), Expect = 7.0
Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Frame = +2
Query: 326 RVLAGDARLLRVHHLAXXXXXXXXXXLFFPLGAVP-PPSSRGSEEGVCPAPAPMRRQSPP 502
+ L G A LL HH A P +P P + + P PAP PP
Sbjct: 92 QTLNGSAALLNSHHAAAPAVSLVNNG---PAALLPLPKPAAPAAAPPPPPPAPATLARPP 148
Query: 503 GDVTGXPKGVEAAP 544
G G P A P
Sbjct: 149 GHPAGPPTAAPAVP 162
>AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 422 AVPPPSS--RGSEEGVCPAPAPMRRQSPPGDVTGXP-KGVEAAPHA 550
AVPPP++ G G PAPAP P V+G P G AA A
Sbjct: 296 AVPPPAAAQNGGSAGAAPAPAP--AAGGPAGVSGQPGPGAAAAAPA 339
>D14695-1|BAA03521.1| 391|Homo sapiens KIAA0025 protein.
Length = 391
Score = 30.3 bits (65), Expect = 7.0
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 425 VPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATV 556
VPPPS++ PAPAP+ Q P P AAP V
Sbjct: 196 VPPPSAQEIPVVSAPAPAPIHNQFP---AENQPANQNAAPQVVV 236
>DQ837586-1|ABI18163.1| 275|Homo sapiens homocysteine-inducible
endoplasmic reticulum stress-inducible ubiquitin-like do
protein.
Length = 275
Score = 30.3 bits (65), Expect = 7.0
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 425 VPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATV 556
VPPPS++ PAPAP+ Q P P AAP V
Sbjct: 196 VPPPSAQEIPVVSAPAPAPIHNQFP---AENQPANQNAAPQVVV 236
>CR457116-1|CAG33397.1| 391|Homo sapiens HERPUD1 protein.
Length = 391
Score = 30.3 bits (65), Expect = 7.0
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 425 VPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATV 556
VPPPS++ PAPAP+ Q P P AAP V
Sbjct: 196 VPPPSAQEIPVVSAPAPAPIHNQFP---AENQPANQNAAPQVVV 236
>BC032673-1|AAH32673.1| 391|Homo sapiens homocysteine-inducible,
endoplasmic reticulum stress-inducible, ubiquitin-like
protein.
Length = 391
Score = 30.3 bits (65), Expect = 7.0
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 425 VPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATV 556
VPPPS++ PAPAP+ Q P P AAP V
Sbjct: 196 VPPPSAQEIPVVSAPAPAPIHNQFP---AENQPANQNAAPQVVV 236
>BC008320-1|AAH08320.1| 391|Homo sapiens homocysteine-inducible,
endoplasmic reticulum stress-inducible, ubiquitin-like
protein.
Length = 391
Score = 30.3 bits (65), Expect = 7.0
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 425 VPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATV 556
VPPPS++ PAPAP+ Q P P AAP V
Sbjct: 196 VPPPSAQEIPVVSAPAPAPIHNQFP---AENQPANQNAAPQVVV 236
>BC000086-1|AAH00086.1| 391|Homo sapiens homocysteine-inducible,
endoplasmic reticulum stress-inducible, ubiquitin-like
protein.
Length = 391
Score = 30.3 bits (65), Expect = 7.0
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 425 VPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATV 556
VPPPS++ PAPAP+ Q P P AAP V
Sbjct: 196 VPPPSAQEIPVVSAPAPAPIHNQFP---AENQPANQNAAPQVVV 236
>AK223233-1|BAD96953.1| 391|Homo sapiens homocysteine-inducible,
endoplasmic reticulum stress-inducible, ubiquitin-like
protein.
Length = 391
Score = 30.3 bits (65), Expect = 7.0
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 425 VPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATV 556
VPPPS++ PAPAP+ Q P P AAP V
Sbjct: 196 VPPPSAQEIPVVSAPAPAPIHNQFP---AENQPANQNAAPQVVV 236
>AF217990-1|AAG17233.1| 209|Homo sapiens unknown protein.
Length = 209
Score = 30.3 bits (65), Expect = 7.0
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 425 VPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATV 556
VPPPS++ PAPAP+ Q P P AAP V
Sbjct: 14 VPPPSAQEIPVVSAPAPAPIHNQFP---AENQPANQNAAPQVVV 54
>AF055003-1|AAC09357.1| 356|Homo sapiens unknown protein.
Length = 356
Score = 30.3 bits (65), Expect = 7.0
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 425 VPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATV 556
VPPPS++ PAPAP+ Q P P AAP V
Sbjct: 161 VPPPSAQEIPVVSAPAPAPIHNQFP---AENQPANQNAAPQVVV 201
>AF055001-1|AAC09355.1| 391|Homo sapiens unknown protein.
Length = 391
Score = 30.3 bits (65), Expect = 7.0
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 425 VPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATV 556
VPPPS++ PAPAP+ Q P P AAP V
Sbjct: 196 VPPPSAQEIPVVSAPAPAPIHNQFP---AENQPANQNAAPQVVV 236
>AB034990-1|BAB19010.1| 391|Homo sapiens stress protein Herp
protein.
Length = 391
Score = 30.3 bits (65), Expect = 7.0
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 425 VPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATV 556
VPPPS++ PAPAP+ Q P P AAP V
Sbjct: 196 VPPPSAQEIPVVSAPAPAPIHNQFP---AENQPANQNAAPQVVV 236
>AB034989-1|BAB07891.1| 391|Homo sapiens stress protein Herp
protein.
Length = 391
Score = 30.3 bits (65), Expect = 7.0
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 425 VPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATV 556
VPPPS++ PAPAP+ Q P P AAP V
Sbjct: 196 VPPPSAQEIPVVSAPAPAPIHNQFP---AENQPANQNAAPQVVV 236
>BC092520-1|AAH92520.1| 1441|Homo sapiens KIAA0194 protein protein.
Length = 1441
Score = 29.9 bits (64), Expect = 9.2
Identities = 22/70 (31%), Positives = 28/70 (40%)
Frame = +2
Query: 404 LFFPLGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATVTLARWHQED 583
LF P S +G EG+ A RR P G + P+ A+P +A
Sbjct: 53 LFLPFRTPYRDSEKGKREGLSRLRAVCRRAGPRGRGSFSPRDARASPRLHFLVAA--VTT 110
Query: 584 GTARRRLRTA 613
G A RR R A
Sbjct: 111 GAASRRQRGA 120
>BC059362-1|AAH59362.1| 902|Homo sapiens RALGDS protein protein.
Length = 902
Score = 29.9 bits (64), Expect = 9.2
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATVTLARWHQED 583
P + GSE V PAPAP +Q+P V G+E+AP + L ++D
Sbjct: 285 PTPAPGSELEVAPAPAPELQQAPEPAV-----GLESAPAPALELEPAPEQD 330
>BC021290-1|AAH21290.1| 598|Homo sapiens insulin-like growth factor
2 mRNA binding protein 2 protein.
Length = 598
Score = 29.9 bits (64), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 204 GHGGAHARVLHRFRGAARVLVAKIGPDLSLPTVVAT 311
G GAH + L RF GA+ + GPD+S V+ T
Sbjct: 443 GKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIIT 478
>BC009326-1|AAH09326.2| 595|Homo sapiens SCARF2 protein protein.
Length = 595
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPK 526
P +RG G+ +P+P RR+ PP D PK
Sbjct: 362 PARARGEIGGLSLSPSPERRKPPPPDPATKPK 393
>AY358209-1|AAQ88576.1| 168|Homo sapiens YPLR6490 protein.
Length = 168
Score = 29.9 bits (64), Expect = 9.2
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -3
Query: 322 LPSIVATTVGSDKSGPIFATRTRAA----PRKRCSTRACAPPCP 203
L S VA GS + + + R+R + PR RC+ RA PPCP
Sbjct: 82 LGSRVANAAGS-RPRHLLSERSRRSGRGWPRPRCAYRALLPPCP 124
>AY007790-1|AAG23285.1| 418|Homo sapiens p47 protein.
Length = 418
Score = 29.9 bits (64), Expect = 9.2
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -2
Query: 278 SYFCNEDARCSAKAVQYASVCSAVSSLQPLQWWHFG-VGXLRATKFLNTCANPTVMVSQK 102
+Y NE C V Y + + P++W+H+G VG A K C T + ++
Sbjct: 354 TYDPNEPRYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKRR 413
>AL162417-12|CAI13417.1| 859|Homo sapiens ral guanine nucleotide
dissociation stimulator protein.
Length = 859
Score = 29.9 bits (64), Expect = 9.2
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATVTLARWHQED 583
P + GSE V PAPAP +Q+P V G+E+AP + L ++D
Sbjct: 242 PTPAPGSELEVAPAPAPELQQAPEPAV-----GLESAPAPALELEPAPEQD 287
>AL162417-11|CAI13415.1| 914|Homo sapiens ral guanine nucleotide
dissociation stimulator protein.
Length = 914
Score = 29.9 bits (64), Expect = 9.2
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATVTLARWHQED 583
P + GSE V PAPAP +Q+P V G+E+AP + L ++D
Sbjct: 297 PTPAPGSELEVAPAPAPELQQAPEPAV-----GLESAPAPALELEPAPEQD 342
>AL162417-10|CAI13416.1| 902|Homo sapiens ral guanine nucleotide
dissociation stimulator protein.
Length = 902
Score = 29.9 bits (64), Expect = 9.2
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATVTLARWHQED 583
P + GSE V PAPAP +Q+P V G+E+AP + L ++D
Sbjct: 285 PTPAPGSELEVAPAPAPELQQAPEPAV-----GLESAPAPALELEPAPEQD 330
>AK127524-1|BAC87018.1| 913|Homo sapiens protein ( Homo sapiens
cDNA FLJ45617 fis, clone BRTHA3026916, highly similar
to Ral guanine nucleotide dissociation stimulator. ).
Length = 913
Score = 29.9 bits (64), Expect = 9.2
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATVTLARWHQED 583
P + GSE V PAPAP +Q+P V G+E+AP + L ++D
Sbjct: 296 PTPAPGSELEVAPAPAPELQQAPEPAV-----GLESAPAPALELEPAPEQD 341
>AK090450-1|BAC03431.1| 625|Homo sapiens FLJ00371 protein protein.
Length = 625
Score = 29.9 bits (64), Expect = 9.2
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATVTLARWHQED 583
P + GSE V PAPAP +Q+P V G+E+AP + L ++D
Sbjct: 86 PTPAPGSELEVAPAPAPELQQAPEPAV-----GLESAPAPALELEPAPEQD 131
>AK074114-1|BAB84940.1| 824|Homo sapiens FLJ00185 protein protein.
Length = 824
Score = 29.9 bits (64), Expect = 9.2
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATVTLARWHQED 583
P + GSE V PAPAP +Q+P V G+E+AP + L ++D
Sbjct: 285 PTPAPGSELEVAPAPAPELQQAPEPAV-----GLESAPAPALELEPAPEQD 330
>AK000096-1|BAA90942.1| 418|Homo sapiens protein ( Homo sapiens
cDNA FLJ20089 fis, clone COL03992. ).
Length = 418
Score = 29.9 bits (64), Expect = 9.2
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -2
Query: 278 SYFCNEDARCSAKAVQYASVCSAVSSLQPLQWWHFG-VGXLRATKFLNTCANPTVMVSQK 102
+Y NE C V Y + + P++W+H+G VG A K C T + ++
Sbjct: 354 TYDPNEPRYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKRR 413
>AF522196-1|AAN45861.1| 870|Homo sapiens scavenger receptor type F
protein.
Length = 870
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPK 526
P +RG G+ +P+P RR+ PP D PK
Sbjct: 638 PARARGEIGGLSLSPSPERRKPPPPDPATKPK 669
>AF295775-1|AAG10221.1| 211|Homo sapiens ral guanine nucleotide
dissociation stimulator protein.
Length = 211
Score = 29.9 bits (64), Expect = 9.2
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATVTLARWHQED 583
P + GSE V PAPAP +Q+P V G+E+AP + L ++D
Sbjct: 37 PTPAPGSELEVAPAPAPELQQAPEPAV-----GLESAPAPALELEPAPEQD 82
>AF295773-1|AAG02122.1| 914|Homo sapiens ral guanine nucleotide
dissociation stimulator protein.
Length = 914
Score = 29.9 bits (64), Expect = 9.2
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATVTLARWHQED 583
P + GSE V PAPAP +Q+P V G+E+AP + L ++D
Sbjct: 297 PTPAPGSELEVAPAPAPELQQAPEPAV-----GLESAPAPALELEPAPEQD 342
>AF237585-1|AAG00911.1| 346|Homo sapiens recombinant IgG3 heavy
chain protein.
Length = 346
Score = 29.9 bits (64), Expect = 9.2
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXP 523
PLG PPP R E C P P R P ++ G P
Sbjct: 102 PLGDTPPPCPRCPEPKSCDTPPPCPR-CPAPELLGGP 137
>AF180298-1|AAQ13674.1| 418|Homo sapiens transcriptional regulator
ING2 protein.
Length = 418
Score = 29.9 bits (64), Expect = 9.2
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -2
Query: 278 SYFCNEDARCSAKAVQYASVCSAVSSLQPLQWWHFG-VGXLRATKFLNTCANPTVMVSQK 102
+Y NE C V Y + + P++W+H+G VG A K C T + ++
Sbjct: 354 TYDPNEPRYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKRR 413
>AF117107-1|AAD09827.1| 598|Homo sapiens IGF-II mRNA-binding
protein 2 protein.
Length = 598
Score = 29.9 bits (64), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 204 GHGGAHARVLHRFRGAARVLVAKIGPDLSLPTVVAT 311
G GAH + L RF GA+ + GPD+S V+ T
Sbjct: 443 GKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIIT 478
>AF074968-1|AAG12172.1| 418|Homo sapiens p47ING3 protein protein.
Length = 418
Score = 29.9 bits (64), Expect = 9.2
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -2
Query: 278 SYFCNEDARCSAKAVQYASVCSAVSSLQPLQWWHFG-VGXLRATKFLNTCANPTVMVSQK 102
+Y NE C V Y + + P++W+H+G VG A K C T + ++
Sbjct: 354 TYDPNEPRYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKRR 413
>AF057352-1|AAD31596.1| 556|Homo sapiens hepatocellular carcinoma
autoantigen protein.
Length = 556
Score = 29.9 bits (64), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 204 GHGGAHARVLHRFRGAARVLVAKIGPDLSLPTVVAT 311
G GAH + L RF GA+ + GPD+S V+ T
Sbjct: 401 GKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIIT 436
>AF027169-1|AAQ13414.1| 859|Homo sapiens Ral guanine nucleotide
dissociation stimulator A protein.
Length = 859
Score = 29.9 bits (64), Expect = 9.2
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATVTLARWHQED 583
P + GSE V PAPAP +Q+P V G+E+AP + L ++D
Sbjct: 242 PTPAPGSELEVAPAPAPELQQAPEPAV-----GLESAPAPALELEPAPEQD 287
>AC004537-1|AAQ93373.1| 418|Homo sapiens unknown protein.
Length = 418
Score = 29.9 bits (64), Expect = 9.2
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -2
Query: 278 SYFCNEDARCSAKAVQYASVCSAVSSLQPLQWWHFG-VGXLRATKFLNTCANPTVMVSQK 102
+Y NE C V Y + + P++W+H+G VG A K C T + ++
Sbjct: 354 TYDPNEPRYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKRR 413
>AB052951-1|BAC53753.1| 866|Homo sapiens SRECRP-1 protein.
Length = 866
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPK 526
P +RG G+ +P+P RR+ PP D PK
Sbjct: 633 PARARGEIGGLSLSPSPERRKPPPPDPATKPK 664
>AB037729-1|BAA92546.1| 745|Homo sapiens KIAA1308 protein protein.
Length = 745
Score = 29.9 bits (64), Expect = 9.2
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATVTLARWHQED 583
P + GSE V PAPAP +Q+P V G+E+AP + L ++D
Sbjct: 93 PTPAPGSELEVAPAPAPELQQAPEPAV-----GLESAPAPALELEPAPEQD 138
>AB024433-1|BAD93345.1| 866|Homo sapiens NSR1 protein.
Length = 866
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPK 526
P +RG G+ +P+P RR+ PP D PK
Sbjct: 633 PARARGEIGGLSLSPSPERRKPPPPDPATKPK 664
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,228,473
Number of Sequences: 237096
Number of extensions: 2305547
Number of successful extensions: 10608
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 8586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10545
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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