Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0448
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z83241-3|CAB05818.1| 422|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z81120-9|CAB03349.1| 422|Caenorhabditis elegans Hypothetical pr... 30 1.4
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p... 29 2.4
Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical p... 29 4.3
Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical p... 29 4.3
AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical... 29 4.3
AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical... 29 4.3
AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin ... 29 4.3
AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin ... 29 4.3
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 29 4.3
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 28 5.6
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 28 7.4
Z70287-6|CAH04747.1| 443|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 27 9.8
U88308-18|AAK68217.1| 198|Caenorhabditis elegans Uncoordinated ... 27 9.8
U88308-16|AAK68212.1| 586|Caenorhabditis elegans Uncoordinated ... 27 9.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 27 9.8
AF144262-1|AAD37370.1| 289|Caenorhabditis elegans AP180-like ad... 27 9.8
AF144257-1|AAD37365.1| 586|Caenorhabditis elegans AP180-like ad... 27 9.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 27 9.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 27 9.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 27 9.8
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 31.9 bits (69), Expect = 0.46
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 540 AASTPLGXPVTSPGGDCLLIGAGAGQTPSSDPRLDGGGTAP 418
AA+ P G + GGD + GAG P++D RL G AP
Sbjct: 481 AAAAPAGDAPAAGGGDDAVDGAGDFLGPAADLRLAGAAGAP 521
>Z83241-3|CAB05818.1| 422|Caenorhabditis elegans Hypothetical
protein T12D8.8 protein.
Length = 422
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 416 LGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPK 526
LGA PP EG CP ++++P + T P+
Sbjct: 36 LGATLPPKPADKPEGKCPMSEEPKKETPAAEATPEPE 72
>Z81120-9|CAB03349.1| 422|Caenorhabditis elegans Hypothetical
protein T12D8.8 protein.
Length = 422
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 416 LGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPK 526
LGA PP EG CP ++++P + T P+
Sbjct: 36 LGATLPPKPADKPEGKCPMSEEPKKETPAAEATPEPE 72
>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
protein C32E8.11 protein.
Length = 1927
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -3
Query: 337 CQDSSLPSIVATTVGSDKSGPIFATRTRAAPRKRC--STRACAPP 209
C++SSLP+ + KS A +++A R + S RACAPP
Sbjct: 871 CKESSLPTYSPFFMHYSKSDQSAAEQSQARVRAKMEKSVRACAPP 915
>Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSPP 502
P +P P +RG+ G P P+R+ PP
Sbjct: 1077 PPSTIPLPPTRGASVGPGPPAVPVRKAPPP 1106
>Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSPP 502
P +P P +RG+ G P P+R+ PP
Sbjct: 1071 PPSTIPLPPTRGASVGPGPPAVPVRKAPPP 1100
>AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSPP 502
P +P P +RG+ G P P+R+ PP
Sbjct: 1077 PPSTIPLPPTRGASVGPGPPAVPVRKAPPP 1106
>AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSPP 502
P +P P +RG+ G P P+R+ PP
Sbjct: 1071 PPSTIPLPPTRGASVGPGPPAVPVRKAPPP 1100
>AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin
UNC-26B protein.
Length = 1113
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSPP 502
P +P P +RG+ G P P+R+ PP
Sbjct: 1071 PPSTIPLPPTRGASVGPGPPAVPVRKAPPP 1100
>AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin
UNC-26A protein.
Length = 1119
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSPP 502
P +P P +RG+ G P P+R+ PP
Sbjct: 1077 PPSTIPLPPTRGASVGPGPPAVPVRKAPPP 1106
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 613 RSPQPPTRRPVLLVPAR*SDGSVRRSLNPLRXP---RDITGRRLPP 485
RSP PP RR + P R S RR ++ R P R R PP
Sbjct: 113 RSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQRSRSPPP 158
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +2
Query: 428 PPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATVTLARWHQE 580
PPP + P P P+R +PP P+ + AA A + +E
Sbjct: 549 PPPPREPTPREPTPEPEPVREPTPPPPPPAKPRPLTAAEIAAQKRKAYSEE 599
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSPPG 505
P G PP G E P PM ++SPPG
Sbjct: 221 PPGPRGPPGETGDEGEGGPDGIPMEKKSPPG 251
>Z70287-6|CAH04747.1| 443|Caenorhabditis elegans Hypothetical
protein R09E10.9 protein.
Length = 443
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +2
Query: 428 PPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHATV 556
PP + ++GV P+P P+ P + K V P ++
Sbjct: 325 PPKIEKDGDDGVSPSPVPVSTPPVPSTIPSPSKVVPNPPQKSL 367
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 410 FPLGAVPPPSSR--GSEEGVCPAPAPMRRQSPP 502
+P G PPP R + G+ P P P R +PP
Sbjct: 343 YPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP 375
>U88308-18|AAK68217.1| 198|Caenorhabditis elegans Uncoordinated
protein 11, isoform f protein.
Length = 198
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = +2
Query: 410 FPLGAVPPPSSRGSEEGVCPAP----APM---RRQSPPGDVTGXPKGVEAAP 544
FP VPPP++ + GV PAP AP Q+PP + P G +AAP
Sbjct: 28 FPTN-VPPPAAHSAPFGVQPAPQHSAAPFYANLHQAPPMQ-SQAPNGHQAAP 77
>U88308-16|AAK68212.1| 586|Caenorhabditis elegans Uncoordinated
protein 11, isoform a protein.
Length = 586
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = +2
Query: 410 FPLGAVPPPSSRGSEEGVCPAP----APM---RRQSPPGDVTGXPKGVEAAP 544
FP VPPP++ + GV PAP AP Q+PP + P G +AAP
Sbjct: 416 FPTN-VPPPAAHSAPFGVQPAPQHSAAPFYANLHQAPPMQ-SQAPNGHQAAP 465
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 410 FPLGAVPPPSSR--GSEEGVCPAPAPMRRQSPP 502
+P G PPP R + G+ P P P R +PP
Sbjct: 353 YPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP 385
>AF144262-1|AAD37370.1| 289|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 289
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = +2
Query: 410 FPLGAVPPPSSRGSEEGVCPAP----APM---RRQSPPGDVTGXPKGVEAAP 544
FP VPPP++ + GV PAP AP Q+PP + P G +AAP
Sbjct: 119 FPTN-VPPPAAHSAPFGVQPAPQHSAAPFYANLHQAPPMQ-SQAPNGHQAAP 168
>AF144257-1|AAD37365.1| 586|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 586
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = +2
Query: 410 FPLGAVPPPSSRGSEEGVCPAP----APM---RRQSPPGDVTGXPKGVEAAP 544
FP VPPP++ + GV PAP AP Q+PP + P G +AAP
Sbjct: 416 FPTN-VPPPAAHSAPFGVQPAPQHSAAPFYANLHQAPPMQ-SQAPNGHQAAP 465
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +2
Query: 413 PLGAVPPPSSRGSE----EGVCPAPAPMRRQSPP-GDVTGXP 523
P G++PPP + GS G P P +RQ+P TG P
Sbjct: 308 PTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 349
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +2
Query: 413 PLGAVPPPSSRGSE----EGVCPAPAPMRRQSPP-GDVTGXP 523
P G++PPP + GS G P P +RQ+P TG P
Sbjct: 329 PTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 370
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +2
Query: 413 PLGAVPPPSSRGSE----EGVCPAPAPMRRQSPP-GDVTGXP 523
P G++PPP + GS G P P +RQ+P TG P
Sbjct: 314 PTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 355
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,779,369
Number of Sequences: 27780
Number of extensions: 312929
Number of successful extensions: 1145
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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