Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0448
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.53 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   3.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.6  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   8.6  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 547 VRRSLNPLRXPRDITGRRLPPHRGWSWTN 461
           V  SLN +       GR L P+  WSW N
Sbjct: 90  VPSSLNVISEKIGNGGRLLQPYPDWSWAN 118


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 419  GAVPPPSSRGSEEGVCPAPAPMRRQSPPGDV 511
            G   PP +  S + V       R+Q  PGDV
Sbjct: 1750 GCASPPPAATSMKSVSSRRRQQRKQQTPGDV 1780


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 419  GAVPPPSSRGSEEGVCPAPAPMRRQSPPGDV 511
            G   PP +  S + V       R+Q  PGDV
Sbjct: 1746 GCASPPPAATSMKSVSSRRRQQRKQQTPGDV 1776


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 556 DGSVRRSLNPLRXPRDITGRRLPPHRGWSWTN 461
           DG V  SLN +       G  L P+  WSW N
Sbjct: 88  DG-VPSSLNVISEKIGNGGCLLQPYPDWSWAN 118


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 156 GDEVFKHLCQPYSY 115
           G E FK+  QPY +
Sbjct: 585 GSETFKYSSQPYGF 598


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 559 SDGSVRRSLNPLRXPRDITGRRLPPHRGWSW 467
           +DG V  SLN +       G  L P+  WSW
Sbjct: 84  NDG-VPSSLNVISNKIGNGGPLLEPYPNWSW 113


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 156 GDEVFKHLCQPYSY 115
           G E FK+  QPY +
Sbjct: 585 GSETFKYSSQPYGF 598


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 559 SDGSVRRSLNPLRXPRDITGRRLPPHRGW 473
           +D ++R +++     RD+   R+PPHR W
Sbjct: 81  NDVNMRWNVSDYGGVRDL---RIPPHRLW 106


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +2

Query: 428 PPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKG 529
           P   + G +     +P   +R SPP    G P G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPG 49



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +2

Query: 467 PAPAPMRRQSPPGDVTGXPKGVEAAP 544
           P P P   QSP     G P      P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGP 46


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 122 TVMVSQKLVCC*ATYHIWICTR 57
           TV  S+++    A  H WIC R
Sbjct: 152 TVNPSKRITASEALKHPWICQR 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,883
Number of Sequences: 438
Number of extensions: 3773
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)