Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0448
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67600.1 68418.m08524 expressed protein                             29   2.3  
At5g56890.1 68418.m07099 protein kinase family protein contains ...    29   3.0  
At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family...    29   3.0  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    29   3.0  
At2g18470.1 68415.m02151 protein kinase family protein contains ...    29   3.9  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    28   5.2  
At2g23990.2 68415.m02866 plastocyanin-like domain-containing pro...    27   9.1  
At2g23990.1 68415.m02865 plastocyanin-like domain-containing pro...    27   9.1  

>At5g67600.1 68418.m08524 expressed protein
          Length = 82

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXP 523
           P+GA PPP     ++G  PA  P     PPG   G P
Sbjct: 8   PVGA-PPPQGYPPKDGYPPAGYPPAGYPPPGYAQGYP 43


>At5g56890.1 68418.m07099 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 1113

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 573 CQRARVTVACGAASTPLGXPVTSPGGDCLLIGAGAGQTPSSDPRLDGGGTAPRGK 409
           C  + V VA  ++ + L  P++SP         G GQ PS+ P        P  K
Sbjct: 11  CLVSSVLVAASSSGSELLSPLSSPPSPLPETSKGFGQAPSNSPESHKSDNVPPSK 65


>At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family
           protein similar to proline-rich protein precursor
           GB:AAC34889 [Glycine max]
          Length = 388

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 416 LGAVPPPSSRGSEEGVCPAPAPM 484
           LG VPPPS  G   G  P PAP+
Sbjct: 326 LGPVPPPSQVGPGGGPPPRPAPI 348


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 422 AVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKG 529
           A PPP     ++G  P P P   +  P    G PKG
Sbjct: 406 AAPPPPPPPGKKGAGPPPPPPMSKKGPPKPPGNPKG 441



 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 422 AVPPPSSRGSEEGVCPAPAPMRRQSPP---GDVTGXPKGVEAA 541
           A PPP   G +    P P PM ++ PP   G+  G  K  E +
Sbjct: 407 APPPPPPPGKKGAGPPPPPPMSKKGPPKPPGNPKGPTKSGETS 449


>At2g18470.1 68415.m02151 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 633

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 431 PPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAPHA 550
           PPS+  S     PAP+P     P GD +  P     +P A
Sbjct: 19  PPSNTNSTTSSPPAPSPPSPTPPQGDSSSSPPPDSTSPPA 58


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 416 LGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTGXPKGVEAAP 544
           LGA PPP      +   P P P+ +   P    G  +G  + P
Sbjct: 711 LGAPPPPPPPPLSKTPAPPPPPLSKTPVPPPPPGLGRGTSSGP 753


>At2g23990.2 68415.m02866 plastocyanin-like domain-containing
           protein 
          Length = 226

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTG 517
           P  A P PS + S   + PAPAP  + S  G V G
Sbjct: 175 PAPAPPTPSPKSSTSTMAPAPAP-AKSSAVGLVAG 208


>At2g23990.1 68415.m02865 plastocyanin-like domain-containing
           protein 
          Length = 207

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 413 PLGAVPPPSSRGSEEGVCPAPAPMRRQSPPGDVTG 517
           P  A P PS + S   + PAPAP  + S  G V G
Sbjct: 156 PAPAPPTPSPKSSTSTMAPAPAP-AKSSAVGLVAG 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,941,169
Number of Sequences: 28952
Number of extensions: 290331
Number of successful extensions: 998
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)