Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0447
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   3.4  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = -1

Query: 196 VFISANGITNPHYTKSSSFRINNSNLTSLKTHFGSAKVINRT-LPISAANHPCIT 35
           V  ++  IT+P+ T SSS +++ ++ T + T   ++KV + T +P+++ N    T
Sbjct: 597 VLYTSTPITSPNSTSSSSTQVSWNSTTPI-TGTSTSKVTSSTSIPLTSTNRTSTT 650


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 172 TNPHYTKSSSFRINNSNLTSLKTHFGSAKVINR 74
           T PH+ + S+   NNSN  SL  H  S    N+
Sbjct: 130 TTPHFPQVSNHAPNNSNSPSLTWHTSSGDDSNQ 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,175
Number of Sequences: 5004
Number of extensions: 60913
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)