Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0447
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0152 + 20669949-20670326,20670887-20670997,20671079-206712...    31   1.1  
08_01_0878 + 8624616-8624761,8625861-8626274,8626895-8626945,862...    30   2.0  
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389...    29   4.6  
01_04_0019 - 15134494-15135863,15135966-15136083,15136226-151362...    29   4.6  

>11_06_0152 +
           20669949-20670326,20670887-20670997,20671079-20671280,
           20671393-20671675,20672145-20672234,20672366-20672473,
           20672595-20672975,20673250-20673324,20673685-20673797,
           20676233-20676742,20676807-20677300
          Length = 914

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +2

Query: 35  CYAWMVRGRNW*GSVNHFCRPKMRFKTSKV*VVYPKT*GLSIMGIRNTI 181
           C AW    RN    VNHFCR K    ++K  V+  KT   S +GI N++
Sbjct: 253 CVAWPANFRNQ-TFVNHFCRVK-TVSSAKKEVILRKTALKSTIGILNSL 299


>08_01_0878 +
           8624616-8624761,8625861-8626274,8626895-8626945,
           8627179-8627215,8629535-8630059
          Length = 390

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 398 HHCKVPCRYADNPNYFTPLPISKE-HPN 318
           HH + PC    NP Y   +P SK  HPN
Sbjct: 51  HHHRYPCIQIKNPRYNPQIPKSKSVHPN 78


>02_04_0437 -
           22938263-22938273,22938345-22938444,22938727-22938908,
           22938989-22939092,22939792-22939857,22940032-22940105,
           22940241-22940309,22940902-22941028,22941740-22942971,
           22943163-22943486,22943500-22943793
          Length = 860

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 586 DPPQHSLPPNFLSFERFSCKYRPC 515
           D PQHS PPN +S      + RPC
Sbjct: 583 DSPQHSEPPNIVSHRDEVPQLRPC 606


>01_04_0019 -
           15134494-15135863,15135966-15136083,15136226-15136278,
           15136293-15137271,15138980-15139054
          Length = 864

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +1

Query: 310 SVLFGCSFEIGNGV---K*LGLSAYRQGTLQWC 399
           +VLFG S  IG+GV      G  AYR  T  WC
Sbjct: 172 TVLFGASLVIGDGVLTPPMSGERAYRNTTTTWC 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,379,755
Number of Sequences: 37544
Number of extensions: 366272
Number of successful extensions: 672
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)