Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0447
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74080.1 68414.m08580 myb family transcription factor (MYB122...    30   1.7  
At3g29385.1 68416.m03692 hypothetical protein                          28   5.1  
At1g09700.1 68414.m01089 double-stranded RNA-binding domain (DsR...    28   6.7  
At1g19440.1 68414.m02422 very-long-chain fatty acid condensing e...    27   8.9  

>At1g74080.1 68414.m08580 myb family transcription factor (MYB122)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 333

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 190 ISANGITNPHYTKSSSFRINNSNLTSLKTHFGSAKVINRTLPISAAN 50
           I +NG+   H T ++S      + +S  TH  S   INR++ + A +
Sbjct: 191 IGSNGLLTSHTTPTTSVSEGERSTSSSSTHTSSNLPINRSITVDATS 237


>At3g29385.1 68416.m03692 hypothetical protein
          Length = 218

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -1

Query: 205 PKYVFISANGITNPHYTKSSSFRINNSNLTSLKTHFGSAKVINRTLPISAAN 50
           P +VF+  N   N         RIN +N  SLK      K INR    +A+N
Sbjct: 79  PTFVFLGDNAALNYEIVLYYVSRINLANSCSLKCRSDLDKSINRQTSKTASN 130


>At1g09700.1 68414.m01089 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif; supporting
           cDNA gi|12247456|gb|AF276440.1|AF276440
          Length = 419

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 409 KRKGTIARSPVDTLTTPTILRHCQSQKS 326
           K K T+A++P D +  P    HCQ+ +S
Sbjct: 219 KGKRTVAKNPEDIIIPPQPTDHCQNDQS 246


>At1g19440.1 68414.m02422 very-long-chain fatty acid condensing
           enzyme, putative similar to GB:AAD37122 from
           [Arabidopsis thaliana]
          Length = 516

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 263 QPNPDSLKYLWVISQYDKIA 204
           Q NPD LK LW+  QY+ ++
Sbjct: 70  QMNPDDLKQLWIHLQYNLVS 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,212,010
Number of Sequences: 28952
Number of extensions: 311471
Number of successful extensions: 631
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)