Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0446
         (704 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q98RX5 Cluster: Chromosomal region maintenance protein ...    38   0.32 
UniRef50_Q54R50 Cluster: Putative uncharacterized protein; n=2; ...    37   0.42 

>UniRef50_Q98RX5 Cluster: Chromosomal region maintenance protein CRM1;
            n=1; Guillardia theta|Rep: Chromosomal region maintenance
            protein CRM1 - Guillardia theta (Cryptomonas phi)
          Length = 949

 Score = 37.5 bits (83), Expect = 0.32
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
 Frame = -1

Query: 377  IRIRTSNS-KIYNNVLSMFCL*LRSQGL*SLNDIIIFCLILLVRNFLANDINFRIPLFYN 201
            I+I  SN    Y N        L       LND+ IF  ++ +   + +  +F+I L +N
Sbjct: 712  IKILNSNKINFYKNFFERVSFILLKNFFQILNDLSIFLYLIFILRKIISSKSFKIKLIFN 771

Query: 200  IK*AIFC*IQEMGSFQF---L*CVFY-NALSAKVLLLKHREVLNFFFVSNFEDLFLILMT 33
               +I    ++  SF     L   F+ N L    ++LK   +L+ F  S F+D FLIL+T
Sbjct: 772  ---SIILGFKKFKSFSLDSKLRVFFFKNFLIVSSIILKKCSILSIFKKSLFKD-FLILLT 827

Query: 32   Q 30
            +
Sbjct: 828  E 828


>UniRef50_Q54R50 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 455

 Score = 37.1 bits (82), Expect = 0.42
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +1

Query: 163 PISCIQQNIAHLI-L*NKGIRKFISLAKKLRTNNIKQNIIMSFKDYR 300
           P+  I++ I HLI   NK I KF  L+K ++T  IKQ  I+SFKD +
Sbjct: 5   PLIVIKKIILHLIRYKNKNILKFFFLSKSIQTFIIKQIEILSFKDIK 51


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,849,319
Number of Sequences: 1657284
Number of extensions: 11664398
Number of successful extensions: 25754
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25750
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)