Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0446
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   3.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   3.5  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   6.0  
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    25   8.0  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   8.0  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   8.0  

>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 147 IMCFLQCSFCESPPPKAS 94
           +  F+QC  CESP PK S
Sbjct: 628 LKAFVQCEQCESPLPKLS 645


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 388 C*FTLESEQVIVKYTTTFYQCFVFDFGVKACN 293
           C + LE  QV+ K T+  Y C     GV  CN
Sbjct: 112 CTYILEQMQVVTKNTSHLYDC--IRSGVSICN 141


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 131 NALSAKVLLLKHREVLNFFFVSNFEDLFL--ILMTQPFKYEML 9
           NA + ++LL+      NF+F     DLF+   L  +PF Y +L
Sbjct: 222 NAETFEILLVAFASQKNFWFFEKTYDLFMQSKLTWRPFTYRVL 264


>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 93  PML*EEDFRRKSIVKNTL*KLK*AHLLYSTKYCSF 197
           P+L  +++   SI+ N + K    HLLYS+K  SF
Sbjct: 63  PLL-NKNYPNPSIISNIIQKALSNHLLYSSKNYSF 96


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 656 NHFHGKKKKNSLVFKNFNTLPPFLCFPLTTHSESVIWEM*CT*QLLHP 513
           NH H KK++ S +  N N L      P+    E    E  CT  +++P
Sbjct: 292 NHSHNKKRRLSSLSTNNNHLCDNCHKPVNCEVEDTCKEAYCTKCIINP 339


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 24  EGLGHKYQKQIFKVTHEKEIQNLPML*EEDFRRKSI 131
           E L H+++ QI K+  E   QN  +L ++D   KSI
Sbjct: 122 ENLKHQFEDQIEKLNSEISNQNSLILQKKDELEKSI 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,773
Number of Sequences: 5004
Number of extensions: 54892
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)