Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0446
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0686 + 35553179-35553553,35554028-35554399,35554486-35554965     29   3.6  
02_04_0370 - 22427559-22427590,22427783-22427964,22428754-224289...    29   3.6  
02_05_0608 + 30329174-30329362,30329681-30329907,30330035-303301...    28   6.3  
12_02_0202 - 15465885-15466241,15466539-15468122                       28   8.3  
05_05_0338 + 24204301-24206262,24206337-24206495,24206864-242070...    28   8.3  

>03_06_0686 + 35553179-35553553,35554028-35554399,35554486-35554965
          Length = 408

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 652 IFMEKKKKIVWYLKTSIRY-HLFYVFH*LHIQSQSSGKCNAHSNCCI 515
           +F   KKK+V  LK  ++Y    Y+          S  C  H+NCCI
Sbjct: 322 VFNHIKKKLVKKLKLKVQYLDTAYIGGFCSYGKDLSKICTMHANCCI 368


>02_04_0370 -
           22427559-22427590,22427783-22427964,22428754-22428939,
           22429125-22429280,22429366-22429589,22430933-22430968,
           22431390-22431539
          Length = 321

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -3

Query: 645 WXXXXX*FGI*KLQYVTTFSMFSINYTFRVSHLGNVMHIATAASEI 508
           W      FG+    +V T ++  ++Y FR + +G+V+     AS++
Sbjct: 161 WETRRSDFGVSMSHHVATVALIVLSYVFRFARVGSVVLAIHDASDV 206


>02_05_0608 +
           30329174-30329362,30329681-30329907,30330035-30330190,
           30330893-30331078,30331184-30331368,30331571-30331602
          Length = 324

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -3

Query: 645 WXXXXX*FGI*KLQYVTTFSMFSINYTFRVSHLGNVMHIATAASEI 508
           W      FGI  + +V +  + +++Y FR + +G+++     AS++
Sbjct: 163 WEIKRSDFGISMVHHVVSVILIALSYIFRFARVGSIVLAIHDASDV 208


>12_02_0202 - 15465885-15466241,15466539-15468122
          Length = 646

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -2

Query: 226 ISVSLCF---IISNEQYFVEYKRWAH 158
           IS +LCF   +I+ E+YF  +  WAH
Sbjct: 621 ISTALCFSPVVITEERYFKSFVIWAH 646


>05_05_0338 +
           24204301-24206262,24206337-24206495,24206864-24207035,
           24207544-24207842,24208301-24208355,24208438-24208487,
           24208522-24208827
          Length = 1000

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/61 (24%), Positives = 33/61 (54%)
 Frame = +2

Query: 248 YELIILNRILLCRSKITGLDSEVKDKTLIKRCCIFYYYLFGF*CKLTLIYL*GTFQ*LSE 427
           Y+L++L  +++   K+  ++    DKT+     IF  ++F   C+ +++Y  G F  L +
Sbjct: 825 YQLLVLATLMVIGKKLLSIEGPQSDKTI--NTLIFNSFVF---CQESVLYFNGNFTILEK 879

Query: 428 M 430
           +
Sbjct: 880 V 880


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,398,546
Number of Sequences: 37544
Number of extensions: 294965
Number of successful extensions: 531
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)