Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0446
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_28257| Best HMM Match : Gp-FAR-1 (HMM E-Value=3.2)                  31   1.2  
SB_29920| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)                       28   6.4  
SB_39843| Best HMM Match : HAT (HMM E-Value=8.4)                       28   6.4  
SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)                       28   6.4  

>SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2033

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -1

Query: 683 RGGVNTFILNHFHGKKKKNSLVF--KNFNTLP 594
           RG ++TF++NH+ G+ + +S  F  KN +TLP
Sbjct: 498 RGQIDTFVINHYAGEVEYSSYGFLEKNRDTLP 529


>SB_28257| Best HMM Match : Gp-FAR-1 (HMM E-Value=3.2)
          Length = 497

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 95  DALGGGLSQKEHCKKHIIKTEMSPSLVFN 181
           +ALGG   + EH K+ I+KTE++    F+
Sbjct: 360 EALGGSTEEAEHLKERILKTELASKAGFS 388


>SB_29920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 227 LYR*PRNYELIILNRILLCRSKITGLDSEVKDKTLIKRC 343
           LYR  RN+ LI L+R+    +KI  L  E K   L+K C
Sbjct: 1   LYR--RNHGLITLDRLQRAATKIAILQKEKKYHYLVKAC 37


>SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 181 QNIAHLIL*NKGIRKFISLAKKLRTNNIKQNIIMSFKD 294
           QN+ HL +  K ++KF S      TN   ++I + +KD
Sbjct: 183 QNLQHLFVEYKQVKKFWSAFDNWWTNRNSEDIALEYKD 220


>SB_39843| Best HMM Match : HAT (HMM E-Value=8.4)
          Length = 117

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = -2

Query: 562 QSQSSGKCNAHSNCCIRNSVFSRPTHITAXSYELVKLLCAQTINHFTKSLKC 407
           + + SG C   + CC+R+    R     +  +  +++L A+ I H  +++ C
Sbjct: 47  RGEGSGSCGIAAVCCVRDICAGRTGF--SWDFREIRILRAEQILHILQNVSC 96


>SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 181 QNIAHLIL*NKGIRKFISLAKKLRTNNIKQNIIMSFKD 294
           QN+ HL +  K ++KF S      TN   ++I + +KD
Sbjct: 183 QNLQHLFVEYKQVKKFWSAFDNWWTNRNSEDIALEYKD 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,610,062
Number of Sequences: 59808
Number of extensions: 371410
Number of successful extensions: 699
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)