Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0446
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46560.1 68415.m05808 transducin family protein / WD-40 repea...    30   1.3  
At1g51230.1 68414.m05762 hypothetical protein similar to hypothe...    29   3.0  
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ...    28   6.9  
At2g29750.1 68415.m03615 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.2  
At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase fa...    27   9.2  

>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
            family protein similar to CPY (GI:3096961) {Chironomus
            thummi}; contains Pfam PF00400: WD domain, G-beta repeat
            (8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
          Length = 2471

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -2

Query: 559  SQSSGKCNAHSNCCIRNSVFSRPTHITAXSYELVKLLCAQTINH 428
            S SS K    +N    NS F  P  I   + EL++ LC   INH
Sbjct: 2020 SNSSPKAAVTAN---ENSAFQNPKEIHKRTGELIEALCINAINH 2060


>At1g51230.1 68414.m05762 hypothetical protein similar to
           hypothetical protein GB:AAD30637
          Length = 125

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 113 LSQKEHCKKH-IIKTEMSPSLVFN 181
           L+Q  HCK H +I  E+SP ++ N
Sbjct: 5   LNQATHCKNHVVIHNELSPGIILN 28


>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 245 NYELIILNRILLCRSKITGLDSEVKDKTLIKRC 343
           NY   +L+R  +CR   TG   E K+  +  RC
Sbjct: 473 NYGTYLLHRCSICRQLFTGFSYESKELRIDVRC 505


>At2g29750.1 68415.m03615 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 481

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
 Frame = +2

Query: 80  NSEPPDALGGGLSQKEHCKKHIIKTEMSPSLVFNKILLI*YY---KTKGYGNLYR*PRNY 250
           NS P   L  GL  KE  +  +   E  P     K +L+  Y   +  G+    R P NY
Sbjct: 192 NSVPTKVLPSGLFMKETYEPWVELAERFPEA---KGILVNSYTALEPNGFKYFDRCPDNY 248

Query: 251 ELIILNRILLCRSKITGLDSEVKDKTL 331
             I     +LC +    LDS  +D+ +
Sbjct: 249 PTIYPIGPILCSNDRPNLDSSERDRII 275


>At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1)  from {Mus musculus} SP|P98200, {Bos
            taurus} SP|Q29449, {Homo sapiens} SP|O43520; contains
            InterPro accession IPR005834: Haloacid dehalogenase-like
            hydrolase
          Length = 1200

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/68 (22%), Positives = 33/68 (48%)
 Frame = -2

Query: 685  LAGELTLSFLTIFMEKKKKIVWYLKTSIRYHLFYVFH*LHIQSQSSGKCNAHSNCCIRNS 506
            LA  L+   +T+F+     + +++ ++++   F ++H +    +  G+CN    C I   
Sbjct: 1113 LAPSLSYWLITLFVVVATLMPYFIYSALQMSFFPMYHGMIQWLRYEGQCNDPEYCDIVRQ 1172

Query: 505  VFSRPTHI 482
               RPT +
Sbjct: 1173 RSIRPTTV 1180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,838,275
Number of Sequences: 28952
Number of extensions: 262341
Number of successful extensions: 536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)