Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0445
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.30 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.30 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.6  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   8.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 290 NVLKSKCS*I*TGCNNLYNYEKSVFYIKY 376
           N+ K  CS +   C ++ NY++ VFY  Y
Sbjct: 346 NLQKDVCSKLKGLCPSMANYDRGVFYKNY 374


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 290 NVLKSKCS*I*TGCNNLYNYEKSVFYIKY 376
           N+ K  CS +   C ++ NY++ VFY  Y
Sbjct: 436 NLQKDVCSKLKGLCPSMANYDRGVFYKNY 464


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 184 QMMKIDKYLYKAFKNIIQLYYL 119
           ++ KIDK+     KNII  YYL
Sbjct: 272 ELTKIDKWFLHKMKNIID-YYL 292


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 251 TNLMRYPKRAFRQ 213
           ++L+RYP+  FRQ
Sbjct: 383 SSLLRYPRSIFRQ 395


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 368 YRKQIFHNYTNYCSQFKFRNISILI 294
           Y+   ++NY NY  +  ++N  I I
Sbjct: 89  YKYSNYNNYNNYNKKLYYKNYIINI 113


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 355 ICFLY*ISW 381
           ICFLY +SW
Sbjct: 279 ICFLYVLSW 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,021
Number of Sequences: 438
Number of extensions: 3793
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)