Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0444
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q61PF3 Cluster: Putative uncharacterized protein CBG075...    34   3.8  
UniRef50_A0DJF9 Cluster: Chromosome undetermined scaffold_53, wh...    33   6.7  

>UniRef50_Q61PF3 Cluster: Putative uncharacterized protein CBG07566;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG07566 - Caenorhabditis
           briggsae
          Length = 505

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 90  TLATVSAKSSAAFSDLTKT*TKFSGCRINYPRSTLVETCKK*YTYHKMCPFYVFSSTC 263
           T +T + K++  ++  T T T  +      P +T  + CK    YHK C F+  S  C
Sbjct: 383 TQSTTANKANRIYTTTTPTTTTTTATTTTVPTTTTADKCKD---YHKECNFWAMSGEC 437


>UniRef50_A0DJF9 Cluster: Chromosome undetermined scaffold_53, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_53,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 462

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 14/42 (33%), Positives = 28/42 (66%)
 Frame = -2

Query: 691 FIQLIIPTFXVYFYYSIIIVSFLNLLRLSFFVKHGIGAKFLL 566
           F+ ++IPT  +Y+++ ++IV F+ L++L+      I +KF L
Sbjct: 327 FLLMMIPTVSLYYFWFLLIVIFIYLVKLTLISFQRIFSKFPL 368


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,023,929
Number of Sequences: 1657284
Number of extensions: 11271325
Number of successful extensions: 22549
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22548
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)