Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0444
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    28   1.5  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   2.6  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    27   3.4  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    26   5.9  

>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/66 (22%), Positives = 35/66 (53%)
 Frame = -2

Query: 451 WKHLKSAKEKNVFYLFDTNARLHRNV*SFLLNFIYTNSMEIKFINL*QITNYLHVIINKS 272
           W +  +  EKNV  + +++  L+R++   +    Y+  ++  F++    T   H++I   
Sbjct: 66  WTYYPAKTEKNVEPIVNSSTYLYRSM--KISKDRYSVDVQKHFMHFNSSTREWHIVIEGV 123

Query: 271 YDLQVE 254
           YDL+++
Sbjct: 124 YDLKIK 129


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -1

Query: 551 MNTADFTDFIVPRAVL*TT*IPIYLTFSTLLKNMETSQI 435
           M +A+ TDF VP+  L TT I   LT ++L  + + S I
Sbjct: 96  MISANATDFTVPQTNLETTGIAFQLTVNSLSSSNQLSVI 134


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 451 WKHLKSAKEKNVFYLFDTNARLHRNV*SFLL 359
           W+ L+S K+K+     +TN+RL + + S  L
Sbjct: 494 WQELRSTKDKDYCLSLETNSRLKQQLSSITL 524


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 523 LFHERYCKLHRSLYI*RFLHC 461
           LF +++CK   S Y   F+HC
Sbjct: 32  LFIDKFCKTQESTYPIHFVHC 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,011
Number of Sequences: 5004
Number of extensions: 54422
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)