Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0444
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)                   28   6.3  
SB_54574| Best HMM Match : WD40 (HMM E-Value=0)                        28   8.3  

>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 691  FIQLIIPTFXVYFYYSIIIVSFLNLLRL 608
            F QL++P   +YF  S+++     LLRL
Sbjct: 2819 FFQLLLPVLVIYFTMSLVLKLTFGLLRL 2846


>SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)
          Length = 993

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 400 CQINKTHFSLLLI*DVSIFLSNVENVKYIGI 492
           CQ+N THF L     V   LSN+ + K  GI
Sbjct: 799 CQVNMTHFKLSFPNKVLKLLSNLSSPKATGI 829


>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1050

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 221 CISLFTCFNQCRPWIIYSASTKLSLSF 141
           CI +++C +  + W+  S+ST LSL+F
Sbjct: 700 CIKVWSCSSGEQTWVYNSSSTCLSLAF 726


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,966,231
Number of Sequences: 59808
Number of extensions: 362042
Number of successful extensions: 799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)