Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0444
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01550.1 68416.m00085 triose phosphate/phosphate translocator...    29   2.2  
At2g41520.2 68415.m05131 DNAJ heat shock N-terminal domain-conta...    29   2.9  
At2g41520.1 68415.m05130 DNAJ heat shock N-terminal domain-conta...    29   2.9  
At3g56370.1 68416.m06269 leucine-rich repeat transmembrane prote...    27   9.0  
At3g06570.1 68416.m00763 kelch repeat-containing F-box family pr...    27   9.0  

>At3g01550.1 68416.m00085 triose phosphate/phosphate translocator,
           putative similar to SWISS-PROT:P52178 triose
           phosphate/phosphate translocator [Cauliflower]{Brassica
           oleracea}
          Length = 383

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -3

Query: 483 IFNVFYIA*KYGNISNQQKRKMCFIYLTPMPDSIGMFKVFC*TLFTQILW 334
           +F V+Y+   Y NI N+Q  +   +Y  P P ++  F++ C TL   I+W
Sbjct: 82  MFGVWYLLNIYYNIFNKQVLR---VY--PYPATVTAFQLGCGTLMIAIMW 126


>At2g41520.2 68415.m05131 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profiles
           PF00226: DnaJ domain, PF00515: TPR Domain
          Length = 1077

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 376 HSYGVWHWCQINKTHFSLLLI*DVSIFLSNVENVKY 483
           HS  VW W +I+K+HF L  +      L  ++ V+Y
Sbjct: 774 HSLIVWRWNKISKSHFYLGNLEKALDILEKLQQVEY 809


>At2g41520.1 68415.m05130 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profiles
           PF00226: DnaJ domain, PF00515: TPR Domain
          Length = 1108

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 376 HSYGVWHWCQINKTHFSLLLI*DVSIFLSNVENVKY 483
           HS  VW W +I+K+HF L  +      L  ++ V+Y
Sbjct: 774 HSLIVWRWNKISKSHFYLGNLEKALDILEKLQQVEY 809


>At3g56370.1 68416.m06269 leucine-rich repeat transmembrane protein
           kinase, putative leucine-rich receptor-like protein
           kinase - Malus domestica, EMBL:AF053127
          Length = 964

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -2

Query: 85  LELVHQSDVIHFSIDSHNLVL 23
           L  +HQS++IH++I S N++L
Sbjct: 790 LAYLHQSNIIHYNIKSSNVLL 810


>At3g06570.1 68416.m00763 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 390

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = -2

Query: 547 IQPTLQISLFHERYCKLHRSLYI 479
           +Q  + +S+F++ YC++H  +Y+
Sbjct: 263 VQTKMAMSMFNDSYCQIHNVIYL 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,466,789
Number of Sequences: 28952
Number of extensions: 255631
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)