Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0442
         (298 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellu...    89   2e-17
UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Ze...    85   3e-16
UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellul...    78   4e-14
UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1; ...    56   2e-07
UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17; Archa...    50   8e-06
UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1; ...    46   1e-04
UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4; ce...    46   2e-04
UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellu...    42   0.002
UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;...    38   0.034
UniRef50_A7HJP3 Cluster: FeoA family protein; n=1; Fervidobacter...    32   2.2  

>UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellular
           organisms|Rep: 40S ribosomal protein S23 - Homo sapiens
           (Human)
          Length = 143

 Score = 89.0 bits (211), Expect = 2e-17
 Identities = 42/44 (95%), Positives = 43/44 (97%)
 Frame = +1

Query: 31  ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 162
           +LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 100 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143


>UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Zea
           mays|Rep: Putative 40S ribosomal protein - Zea mays
           (Maize)
          Length = 309

 Score = 85.0 bits (201), Expect = 3e-16
 Identities = 38/44 (86%), Positives = 43/44 (97%)
 Frame = +1

Query: 31  ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 162
           +L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 226 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 269


>UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellular
           organisms|Rep: 40S ribosomal protein S23 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 145

 Score = 77.8 bits (183), Expect = 4e-14
 Identities = 36/44 (81%), Positives = 41/44 (93%)
 Frame = +1

Query: 31  ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 162
           +L+AGFGRKG A GDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 102 VLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145


>UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 102

 Score = 56.0 bits (129), Expect = 2e-07
 Identities = 27/50 (54%), Positives = 31/50 (62%)
 Frame = -3

Query: 170 YTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSIRRF 21
           Y YDLG SFFS  +A ++T  T TTL  TPG+SP A PL P PA     F
Sbjct: 3   YIYDLGFSFFSFHKANKETPETLTTLNLTPGISPLALPLLPKPANKTSSF 52


>UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17;
           Archaea|Rep: 30S ribosomal protein S12P - Pyrobaculum
           aerophilum
          Length = 147

 Score = 50.4 bits (115), Expect = 8e-06
 Identities = 21/36 (58%), Positives = 30/36 (83%)
 Frame = +1

Query: 49  GRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 156
           G +G ++GDIPGVRFKV+KV  VSL A+++ KK++P
Sbjct: 110 GPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145


>UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 128

 Score = 46.4 bits (105), Expect = 1e-04
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +1

Query: 31  ILVAGFGRKGHAVGDIPGVRFKVVK 105
           +L++GFG KGHAVGDI GVRF+VVK
Sbjct: 69  VLISGFGHKGHAVGDIRGVRFEVVK 93


>UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4;
           cellular organisms|Rep: Protein splicing (Intein) site -
           Caldivirga maquilingensis IC-167
          Length = 661

 Score = 46.0 bits (104), Expect = 2e-04
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = +1

Query: 49  GRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 156
           G +G A GD+PGVRFKV KV  VSL A+   KK++P
Sbjct: 624 GPEGRAYGDLPGVRFKVTKVNGVSLKAILLGKKQKP 659


>UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellular
           organisms|Rep: 30S ribosomal protein S12P - Uncultured
           methanogenic archaeon RC-I
          Length = 142

 Score = 42.3 bits (95), Expect = 0.002
 Identities = 19/36 (52%), Positives = 26/36 (72%)
 Frame = +1

Query: 49  GRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 156
           GR G + GDIPGVRF+V KV +VSL  +   K+++P
Sbjct: 105 GRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGKRDKP 140


>UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;
           n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
           Mus musculus
          Length = 143

 Score = 38.3 bits (85), Expect = 0.034
 Identities = 14/31 (45%), Positives = 26/31 (83%)
 Frame = -2

Query: 135 VESEERHVGYFYHLKTNSGNVTDGVTFTTES 43
           ++S++R++GYF HLK +S ++T  +TF+T+S
Sbjct: 9   LQSQQRNIGYFNHLKEDSRDITYSMTFSTKS 39


>UniRef50_A7HJP3 Cluster: FeoA family protein; n=1; Fervidobacterium
           nodosum Rt17-B1|Rep: FeoA family protein -
           Fervidobacterium nodosum Rt17-B1
          Length = 158

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 25  RRILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 138
           +R+L +    K  AVG +PGVR +V+K A +    LYK
Sbjct: 15  KRVLPSDISPKLRAVGILPGVRIEVIKAAPMGDPRLYK 52


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,703,384
Number of Sequences: 1657284
Number of extensions: 4026191
Number of successful extensions: 8799
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8799
length of database: 575,637,011
effective HSP length: 75
effective length of database: 451,340,711
effective search space used: 10380836353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)