Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0442
         (298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    71   5e-14
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    71   5e-14
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    25   1.8  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   3.1  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    24   4.2  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    24   5.5  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    24   5.5  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 70.5 bits (165), Expect = 5e-14
 Identities = 32/44 (72%), Positives = 38/44 (86%)
 Frame = +1

Query: 31  ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 162
           +L++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 100 VLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 70.5 bits (165), Expect = 5e-14
 Identities = 32/44 (72%), Positives = 38/44 (86%)
 Frame = +1

Query: 31  ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 162
           +L++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 100 VLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 159 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 37
           SW L+++ V S+E+  GY   L     N+ D  G+    ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -2

Query: 255 NNIYYVLGFYIL*TYKQRAXRQQVTYHNVHL*SWSLLFLFVESEERHVGYFYHLKTN--S 82
           NN Y + G+    T K++  R  +++HN     W+ L  F+      + YFY   ++  S
Sbjct: 180 NNPYIIRGYRFY-TSKRKCFRSILSWHNETFNIWTHLSAFIVF-FAVLAYFYPSSSSWVS 237

Query: 81  GNVTDGV 61
            NV++ +
Sbjct: 238 SNVSNRI 244


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 193 TAGHLSQCTPMILVAPFSLCRERGETRWLL 104
           TA  L+QC  +I +  F++ RE     WLL
Sbjct: 212 TAVFLAQCVKVISIGLFNIRREMMIIIWLL 241


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 96  LKTNSGNVTDGVTFTTESRH*YSSFSSMWFRQ 1
           +K  +  VTD     T+S H Y   + M FR+
Sbjct: 670 IKALTSTVTDSTLVDTQSFHPYKVVTDMIFRE 701


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -2

Query: 249 IYYVLGFYIL*TYKQRAXRQQVTYHNVHL*SWSLLFLFVESEERHVGYFYHLKTNSGN 76
           + YV G     TY     + ++ Y   +  ++  LFL +      VGY++HL  N  N
Sbjct: 234 VSYVSGIVFYTTYADFPKKIRLLYSGNYQGNFFPLFLSILC----VGYYHHLLNNPSN 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,000,590
Number of Sequences: 5004
Number of extensions: 16869
Number of successful extensions: 36
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)