Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0442
(298 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 85 9e-18
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 85 9e-18
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 46 4e-06
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 28 1.5
09_02_0138 + 4860354-4860833 26 4.6
02_02_0357 + 9360108-9360754,9363732-9364137 26 4.6
02_02_0355 + 9312814-9313650 26 4.6
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 25 8.0
05_05_0393 - 24632570-24632629,24633212-24633370,24633496-246336... 25 8.0
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 85.0 bits (201), Expect = 9e-18
Identities = 38/44 (86%), Positives = 43/44 (97%)
Frame = +1
Query: 31 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 162
+L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 99 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 85.0 bits (201), Expect = 9e-18
Identities = 38/44 (86%), Positives = 43/44 (97%)
Frame = +1
Query: 31 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 162
+L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 269 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 81.4 bits (192), Expect = 1e-16
Identities = 36/42 (85%), Positives = 41/42 (97%)
Frame = +1
Query: 31 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 156
+L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 99 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 46.4 bits (105), Expect = 4e-06
Identities = 19/25 (76%), Positives = 23/25 (92%)
Frame = +1
Query: 31 ILVAGFGRKGHAVGDIPGVRFKVVK 105
+L++GFG KGHAVGDI GVRF+VVK
Sbjct: 69 VLISGFGHKGHAVGDIRGVRFEVVK 93
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -1
Query: 202 RXSTAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 44
+ T GH+++ P+ L LCR E + ++ P E E H+ DL I
Sbjct: 135 KLGTTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191
>09_02_0138 + 4860354-4860833
Length = 159
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 16 RRKRRILVAGFGRK-GHAVGDIPGVRFKVV 102
RR+RR GFGR+ G A GD+ +VV
Sbjct: 25 RRQRRWTAEGFGRRGGEAEGDLAAAMPEVV 54
>02_02_0357 + 9360108-9360754,9363732-9364137
Length = 350
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 16 RRKRRILVAGFGRK-GHAVGDIPGVRFKVV 102
RR+RR GFGR+ G A GD+ +VV
Sbjct: 25 RRQRRWTAEGFGRRGGEAEGDLAAAMPEVV 54
>02_02_0355 + 9312814-9313650
Length = 278
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 16 RRKRRILVAGFGRK-GHAVGDIPGVRFKVV 102
RR+RR GFGR+ G A GD+ +VV
Sbjct: 45 RRQRRWTAEGFGRRGGEAEGDLAAAMPEVV 74
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 129 SEERHVGYFYHLKTNSGNVTDGVTFTTESRH*YSSFSSM 13
SE++H GY + ++T GV+ T+S SFSSM
Sbjct: 276 SEQQHSGYGVVGADQAASMTAGVSAYTDSISNSISFSSM 314
>05_05_0393 -
24632570-24632629,24633212-24633370,24633496-24633612,
24633697-24633831,24634140-24634337,24634449-24634529,
24634845-24635141,24635231-24636013,24636589-24636765
Length = 668
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 10 PHRRKRRILVAGFGRKGHAVGDIPGVRFKVVKVAN 114
P+ R ++ G G GH GD G F V V N
Sbjct: 427 PYPRSNHVVTGGLGNSGHTPGD--GKLFYGVHVDN 459
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,525,961
Number of Sequences: 37544
Number of extensions: 114449
Number of successful extensions: 300
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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