Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0442
         (298 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               87   2e-18
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               40   3e-04
SB_3221| Best HMM Match : rve (HMM E-Value=3)                          27   2.1  
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.3  
SB_33394| Best HMM Match : PCMT (HMM E-Value=0.53)                     25   8.3  

>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 39/44 (88%), Positives = 44/44 (100%)
 Frame = +1

Query: 31  ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 162
           +L++GFGR+GHAVGDIPGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 100 VLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKKERPRS 143


>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 14/19 (73%), Positives = 19/19 (100%)
 Frame = +1

Query: 31  ILVAGFGRKGHAVGDIPGV 87
           +L++GFGR+GHAVGDIPG+
Sbjct: 99  VLISGFGRRGHAVGDIPGI 117


>SB_3221| Best HMM Match : rve (HMM E-Value=3)
          Length = 324

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 185 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRP 48
           S  T  TYDL  SF+S+  +  + LAT   +K++P +   +  L+P
Sbjct: 9   SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKP 53


>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 4   PKPHRRKRRILVAGFGRKGHAVG 72
           P+   +K+  L+ G GRKGHA G
Sbjct: 137 PELLSQKKVELIVGDGRKGHAAG 159


>SB_33394| Best HMM Match : PCMT (HMM E-Value=0.53)
          Length = 69

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 4  PKPHRRKRRILVAGFGRKGHAVG 72
          P+   +K+  L+ G GRKGHA G
Sbjct: 29 PELLSQKKVELIVGDGRKGHAAG 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,692,315
Number of Sequences: 59808
Number of extensions: 128516
Number of successful extensions: 276
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 339527403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)