Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0442
         (298 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...    81   1e-16
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    27   3.2  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    27   3.2  
AC006629-8|ABC48258.1|  312|Caenorhabditis elegans Hypothetical ...    25   7.4  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 36/44 (81%), Positives = 41/44 (93%)
 Frame = +1

Query: 31  ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 162
           +LV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KKERPRS
Sbjct: 100 VLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 98  TLKRTPGMSPTA*PLRPNPATS 33
           T  RTP  +P A P RP P+ S
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRS 59


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 98  TLKRTPGMSPTA*PLRPNPATS 33
           T  RTP  +P A P RP P+ S
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRS 188


>AC006629-8|ABC48258.1|  312|Caenorhabditis elegans Hypothetical
           protein F12E12.9 protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -2

Query: 255 NNIYYVLGFYIL*TYKQRAXRQQVTYHNVHL*SWSLLFLFVESEERHVGYF 103
           N +++   FY+L TY +   + ++TY NV    W+L    V+S    +G+F
Sbjct: 68  NGVFFT--FYVLNTYPENDVQIKITYGNVST-IWNLKGYSVKS---FIGHF 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,622,086
Number of Sequences: 27780
Number of extensions: 97591
Number of successful extensions: 181
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)