Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0442
         (298 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.34 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.34 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.80 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   0.80 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   9.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 0.34
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 58  GHAVGDIPGVRFKVVKVANVSLL 126
           GH V D+PGVR +V++   + LL
Sbjct: 69  GHPVNDVPGVR-RVLRNGTLVLL 90



 Score = 21.0 bits (42), Expect = 3.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 98   TLKRTPGMSPTA*PLRPNPATSIRR 24
            T  + PG+ P A  L PN  T + R
Sbjct: 1494 TQGQAPGIPPAATFLSPNSTTLVLR 1518


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 0.34
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 58  GHAVGDIPGVRFKVVKVANVSLL 126
           GH V D+PGVR +V++   + LL
Sbjct: 69  GHPVNDVPGVR-RVLRNGTLVLL 90



 Score = 21.0 bits (42), Expect = 3.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 98   TLKRTPGMSPTA*PLRPNPATSIRR 24
            T  + PG+ P A  L PN  T + R
Sbjct: 1490 TQGQAPGIPPAATFLSPNSTTLVLR 1514


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 0.80
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 58 GHAVGDIPGVR 90
          G AVGD+PG+R
Sbjct: 42 GSAVGDVPGLR 52


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 0.80
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 223 FMNL*TTRXSTAGHLSQCTPMILVAPFSLCRERGETRWL 107
           +++  T    T+   + C   ++V PFS   E  E RWL
Sbjct: 75  YLHTATNYFVTSLAFADCLVGLVVMPFSAIYEVLENRWL 113


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 8/30 (26%), Positives = 12/30 (40%)
 Frame = -2

Query: 144 FLFVESEERHVGYFYHLKTNSGNVTDGVTF 55
           F+F +    +  YFY     S +    V F
Sbjct: 130 FIFPQENNYNDNYFYSKSNGSNSSNSDVLF 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,102
Number of Sequences: 438
Number of extensions: 1287
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)