Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0442
(298 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 85 8e-18
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 85 8e-18
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha... 28 1.3
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha... 27 2.2
At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family pr... 26 5.2
At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containi... 26 5.2
At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi... 26 5.2
At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi... 26 5.2
At3g60710.1 68416.m06792 F-box family protein contains F-box dom... 25 6.9
At5g18720.1 68418.m02221 hypothetical protein predicted proteins... 25 9.1
At5g15390.1 68418.m01800 tRNA/rRNA methyltransferase (SpoU) fami... 25 9.1
At4g37040.1 68417.m05246 metallopeptidase M24 family protein sim... 25 9.1
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
ribosomal protein S23, Fragaria x ananassa, PIR:S56673
Length = 142
Score = 85.0 bits (201), Expect = 8e-18
Identities = 38/44 (86%), Positives = 43/44 (97%)
Frame = +1
Query: 31 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 162
+L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 99 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 2 CLNHIEENDE 31
CLN+IEENDE
Sbjct: 89 CLNYIEENDE 98
>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
to 40S ribosomal protein S23 (S12) GB:P46297 from
[Fragaria x ananassa]
Length = 142
Score = 85.0 bits (201), Expect = 8e-18
Identities = 38/44 (86%), Positives = 43/44 (97%)
Frame = +1
Query: 31 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 162
+L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 99 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 2 CLNHIEENDE 31
CLN+IEENDE
Sbjct: 89 CLNYIEENDE 98
>At4g36080.1 68417.m05136 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF00454: Phosphatidylinositol 3-
and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
Length = 3839
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -1
Query: 232 ILHFMNL*TTRXSTAGHLSQCTPMILVAPFSLCRERGETRWLLLPP 95
+LHF+NL ++ HL Q M+++ + + G+T W ++ P
Sbjct: 1731 VLHFLNLFQSKQLGHDHLVQAMQMLILPMLAHAFQNGQT-WEVIDP 1775
>At2g17930.1 68415.m02076 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF02259 FAT domain, PF00454
Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
domain
Length = 3795
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -1
Query: 232 ILHFMNL*TTRXSTAGHLSQCTPMILVAPFSLCRERGETRWLLLPP 95
+LHF+NL ++ HL Q M+++ + + G+T W ++ P
Sbjct: 1675 LLHFLNLFHSKQLGHDHLVQAMQMLILPMLAHAFQNGQT-WEVIDP 1719
>At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 310
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 116 TLATFTTLKRTPGMSPTA*PLRPNPATSI 30
T++T T R+P + T PL PN +T+I
Sbjct: 261 TISTATCPSRSPFVKDTGVPLSPNLSTTI 289
>At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containing
protein low similarity to post-transcriptional control
of chloroplast gene expression CRP1 [Zea mays]
GI:3289002; contains Pfam profile PF01535: PPR repeat
Length = 855
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 114 VGYFYHLKTNSGNVTDGVTFTT 49
+G+FY LK G DG T+TT
Sbjct: 343 LGFFYWLKRQPGFKHDGHTYTT 364
>At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 114 VGYFYHLKTNSGNVTDGVTFTT 49
+G+FY LK G DG T+TT
Sbjct: 348 LGFFYWLKRQPGFKHDGHTYTT 369
>At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 114 VGYFYHLKTNSGNVTDGVTFTT 49
+G+FY LK G DG T+TT
Sbjct: 348 LGFFYWLKRQPGFKHDGHTYTT 369
>At3g60710.1 68416.m06792 F-box family protein contains F-box domain
Pfam:PF00646 ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 320
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 250 YLLCTRILHFMNL*TTRXSTAGHLSQCTPMILVAPFSLC 134
YL+ +IL F+NL T L C+P++ V S+C
Sbjct: 46 YLISRQILKFVNLRTPSDVVLEMLISCSPVLQV--LSIC 82
>At5g18720.1 68418.m02221 hypothetical protein predicted proteins -
Arabidopsis thaliana
Length = 552
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 113 TCLSSLSTKRKRSDQDHRC 169
TC S+ KRKR++ D C
Sbjct: 23 TCAESVGKKRKRNEYDDSC 41
>At5g15390.1 68418.m01800 tRNA/rRNA methyltransferase (SpoU) family
protein similar to SP|P19396 tRNA
(Guanosine-2'-O-)-methyltransferase (EC 2.1.1.34)
{Escherichia coli O157:H7}; contains Pfam profile
PF00588: SpoU rRNA Methylase (RNA methyltransferase,
TrmH) family
Length = 350
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 208 TTRXSTAGHLSQCTPMILVAPFSLCRER 125
TTR + G LS+ IL+A FSL R
Sbjct: 303 TTRLGSHGDLSEAEKEILMAEFSLRHSR 330
>At4g37040.1 68417.m05246 metallopeptidase M24 family protein
similar to SP|O33343 Methionine aminopeptidase (EC
3.4.11.18) (Peptidase M) {Mycobacterium tuberculosis};
contains Pfam profile PF00557: metallopeptidase family
M24
Length = 350
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -3
Query: 209 NNALXDSRSLITMYTYDLGRSFFSL 135
NN++ ++ LI ++ +DLGR S+
Sbjct: 18 NNSIRSTQPLIHLFRFDLGRRHVSM 42
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,232,182
Number of Sequences: 28952
Number of extensions: 90272
Number of successful extensions: 189
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 281229760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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