Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0440
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    27   2.3  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   2.3  
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    27   3.1  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    25   7.1  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   9.3  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   9.3  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.3  

>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 347 HSQVCTICNDRYILSLNHCE 406
           HS V    N+R+ILSL +CE
Sbjct: 177 HSDVTARFNERFILSLGNCE 196


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 523  IQWCNKLRLAIVNTKQMILLYVPVFFC 443
            I WC++  ++ VN+  + L+  P+ FC
Sbjct: 1337 INWCHQKGISYVNSSLLPLMQSPLVFC 1363


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 400 LRNRNEKDNYDDYFHKKKLGHIIISFVLC 486
           + N +++ NYD+  H+K +G I+I    C
Sbjct: 215 MENNDDQYNYDELPHQKLIGSILIIIGWC 243


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = +1

Query: 373 RQIHFVAQPLRNRNEKDNYDDYFHKKKLGHIIISFVLCSQWR 498
           R++H + +   N N  + +D Y  + +  HI++ F+ C+ ++
Sbjct: 82  REVHSLLRLSENENIVNIFDLYIDQFRCLHIVMEFLDCNLYQ 123


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 438 FSQKKTGTYNNIICFVFTMARRSLLHHCIN 527
           F++K TG+ ++++ FV  +  +S L +C N
Sbjct: 581 FTRKSTGSLSSVLIFVKKIGCQSELFNCEN 610


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 93   FTAHDCVISVIYVDFNSFLMAAPWHSNYKTD 185
            F AH      IYVD NSF+    +  +++ D
Sbjct: 983  FHAHHAPQGYIYVDENSFIRICKFQEDFEYD 1013


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 412 NEKDNYDDYFHKKKLGHIIISFVLCSQWRDEVYYTI 519
           +E  N +  FH   +G  I  ++  S +R  VYY I
Sbjct: 166 DELMNVEPGFHHSNIGCQITPYLWISSFRTNVYYLI 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,347
Number of Sequences: 5004
Number of extensions: 51954
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)