Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0440
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                30   1.4  
SB_56218| Best HMM Match : DUF1627 (HMM E-Value=4.1)                   30   1.9  
SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013)                  27   9.9  

>SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 737

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +2

Query: 347 HSQVCTICNDRYILSLNHCEIETRKTI-MMTIFTKKNWDI**YHLFCVHNGETKFITPLY 523
           H  +CT   +  +    + E+  R T  ++T+  ++  ++  Y  F +  GET  I P+ 
Sbjct: 270 HGGICTQMQNGNLHLSAYYEVPIRGTATLLTVIGEEAREV--YSTFTLTEGETDKIEPVI 327

Query: 524 KLFLDFRQPK 553
           K F ++ QP+
Sbjct: 328 KKFAEYCQPR 337


>SB_56218| Best HMM Match : DUF1627 (HMM E-Value=4.1)
          Length = 301

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 350 SQVCTICND-RYILSLNHCEIETRKTIMMTIFTKKNWDI**YHLFCVHNGETKFITPLYK 526
           S +C++    R+ L LN      +   ++T+  ++  ++  Y  F +  GET  I P+ K
Sbjct: 7   SDLCSLGKTTRWRLGLNEKAEAVQVATLLTVIGEEAREV--YSTFTLTEGETDKIEPVIK 64

Query: 527 LFLDFRQPK 553
            F ++ QP+
Sbjct: 65  KFAEYCQPR 73


>SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = -1

Query: 454 VFFCENSH--HNCLSRFYFAVVERQNVSVVTYR---TYLRMKQYVLYNYIIRY 311
           V+ C   +  + C++++   V  RQ V  V  R    Y+ ++QYV+Y  I+R+
Sbjct: 354 VYVCVGQYVVYVCIAKYVVYVRVRQYVVYVRVRQYVVYVCVRQYVVYTLILRF 406


>SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
          Length = 994

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 427  YDDYFHKKKLGHIIISFVLCSQWRDEVYYTIV*TIF 534
            Y+ + H  KL  + + + +C  +RD ++Y    T+F
Sbjct: 954  YNYHLHSGKLEFLALKWAVCEHFRDYLFYVPHFTVF 989


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,826,916
Number of Sequences: 59808
Number of extensions: 330862
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)