Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0440
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ...    29   3.5  
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ...    29   3.5  
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s...    29   3.5  

>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
            almost identical to ubiquitin-specific protease 12
            GI:11993471 [Arabidopsis thaliana], one amino acid
            difference
          Length = 1115

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 237  NSIFSILPLYYSIENIKRQFYSLNAKGLPSE 145
            + I+ I P    IENI  Q+++L A+ +P E
Sbjct: 955  HKIYKIFPSTERIENINDQYWTLRAEEIPEE 985


>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
            almost identical to ubiquitin-specific protease 12
            GI:11993471 [Arabidopsis thaliana], one amino acid
            difference
          Length = 1116

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 237  NSIFSILPLYYSIENIKRQFYSLNAKGLPSE 145
            + I+ I P    IENI  Q+++L A+ +P E
Sbjct: 956  HKIYKIFPSTERIENINDQYWTLRAEEIPEE 986


>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative strong
            similarity to ubiquitin-specific protease 12 (UBP12)
            [Arabidopsis thaliana] GI:11993471; contains Pfam
            profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
            PF00917: MATH domain
          Length = 1115

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 237  NSIFSILPLYYSIENIKRQFYSLNAKGLPSE 145
            + I+ I P    IENI  Q+++L A+ +P E
Sbjct: 955  HKIYKIFPSTERIENINDQYWTLRAEEIPEE 985


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,451,058
Number of Sequences: 28952
Number of extensions: 235544
Number of successful extensions: 425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)