Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0438
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   5.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.7  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.7  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 365 IARVIRRRTVSYKAGNFSL 309
           I  V R+R V+YK  N  L
Sbjct: 92  IVHVFRKRRVNYKDSNIGL 110


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 5/24 (20%), Positives = 15/24 (62%)
 Frame = -3

Query: 92   IPTITAQIFWVEIITFTFSGYINK 21
            +PT++  + W+ ++ + + G  +K
Sbjct: 2000 VPTLSKYLDWIAVMCYDYHGQWDK 2023


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 193 TVKSNAYYIVLPSNSTHI 140
           T   ++ Y+VLPS   HI
Sbjct: 170 TANYDSKYLVLPSGELHI 187


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 546 KQCKSKFKPHYL 511
           K+CK  F PH L
Sbjct: 476 KECKQDFMPHEL 487


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,914
Number of Sequences: 336
Number of extensions: 3302
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)