Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0438
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0167 + 15041626-15043029                                         34   0.094
03_03_0166 - 15027065-15028465                                         34   0.12 
02_02_0663 - 12740733-12741104,12741260-12741326,12741709-127418...    29   2.7  
04_03_0075 + 10726807-10727721,10728756-10729496                       28   6.2  

>03_03_0167 + 15041626-15043029
          Length = 467

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 222 THLVSECLLRCISSTIAIGCFSARRG*RLKREVASLVRNCTSAD---YSC 362
           T ++ +CL RC  + + +    A RG R K E+  LVR+ T+A    YSC
Sbjct: 216 TMMLGQCLFRCGGAAVLLSSDPAHRG-RAKMELRRLVRSTTAASDDAYSC 264


>03_03_0166 - 15027065-15028465
          Length = 466

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +3

Query: 222 THLVSECLLRCISSTIAIGCFSARRG*RLKREVASLVRNCTSAD---YSC 362
           T ++++CL RC  + + +    A RG R K E+  LVR+ T+A    YSC
Sbjct: 215 TMMLAQCLFRCGGAAVLLSNDPAHRG-RAKMELRRLVRSTTAASDDAYSC 263


>02_02_0663 -
           12740733-12741104,12741260-12741326,12741709-12741809,
           12741852-12742273,12743678-12743685,12745164-12745396
          Length = 400

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 206 EKQYLHSLSIGMPAEVHFKYHSNRLFLGTKRLTAKARSCQPCTKLY 343
           +K+YL  +     A + F  H+N L L  K++  +A +C PC + +
Sbjct: 247 QKRYLSLIYYDNHANMLFALHTNNLLLEIKKVYTEAYTC-PCVRYH 291


>04_03_0075 + 10726807-10727721,10728756-10729496
          Length = 551

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 227 VSVNIVSQSFSYRQIERILYSPTVKF 150
           V VN+VS+SF+Y  +     +PT KF
Sbjct: 147 VGVNLVSESFAYAYLSNRAITPTNKF 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,416,803
Number of Sequences: 37544
Number of extensions: 302974
Number of successful extensions: 516
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)