Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0438
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical pr...    39   0.004
Z78059-4|CAB01487.2|  995|Caenorhabditis elegans Hypothetical pr...    39   0.004
AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.     39   0.004
AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.     39   0.004
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    31   0.60 
AC024202-7|AAK93868.3|  227|Caenorhabditis elegans Hypothetical ...    29   4.2  

>Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical
           protein C34B4.1b protein.
          Length = 1099

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = -2

Query: 333 VQGWQLLALAVSLFVPRNNRLLWYLK 256
           +QGW+LLAL + LF+P+   LLW LK
Sbjct: 695 LQGWKLLALTIPLFLPKQYSLLWLLK 720


>Z78059-4|CAB01487.2|  995|Caenorhabditis elegans Hypothetical
           protein C34B4.1a protein.
          Length = 995

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = -2

Query: 333 VQGWQLLALAVSLFVPRNNRLLWYLK 256
           +QGW+LLAL + LF+P+   LLW LK
Sbjct: 591 LQGWKLLALTIPLFLPKQYSLLWLLK 616


>AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.
          Length = 1045

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = -2

Query: 333 VQGWQLLALAVSLFVPRNNRLLWYLK 256
           +QGW+LLAL + LF+P+   LLW LK
Sbjct: 641 LQGWKLLALTIPLFLPKQYSLLWLLK 666


>AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.
          Length = 1099

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = -2

Query: 333 VQGWQLLALAVSLFVPRNNRLLWYLK 256
           +QGW+LLAL + LF+P+   LLW LK
Sbjct: 695 LQGWKLLALTIPLFLPKQYSLLWLLK 720


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 357  SNPPTYSFVQGWQLLALAVSLFVPRNNRLLWYLKC 253
            +NP   S  +GW LL+L V  F P + R + YL C
Sbjct: 1093 NNPSKLSAARGWILLSLCVGCFAP-SERFIKYLFC 1126


>AC024202-7|AAK93868.3|  227|Caenorhabditis elegans Hypothetical
           protein Y71H2B.11 protein.
          Length = 227

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = +1

Query: 427 FNVTNSDLHLIIIRP-----SAQKWPK-FTNS*YEIMRFEFTFTLFRKQKQNA 567
           FN  NS   + I+RP     ++  W K F NS YE+   ++++ LFR +  N+
Sbjct: 166 FNCLNSMEIVGIVRPDKNAATSSTWDKHFDNSKYEVKTTDYSWKLFRNKFSNS 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,019,877
Number of Sequences: 27780
Number of extensions: 296127
Number of successful extensions: 570
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)