Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0438
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65280.1 68414.m07402 DNAJ heat shock N-terminal domain-conta...    30   1.7  
At3g25670.1 68416.m03195 leucine-rich repeat family protein cont...    29   2.2  
At5g49950.1 68418.m06185 embryogenesis-associated protein-relate...    29   3.0  
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ...    28   6.8  
At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative (CH...    28   6.8  

>At1g65280.1 68414.m07402 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 598

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 138 TNEALVFEEVVKIVRYSNYNRADILGRNHN 49
           +NEA  FEEV +I+     +  D+LG NHN
Sbjct: 296 SNEAERFEEVTRIMEADANSPYDVLGVNHN 325


>At3g25670.1 68416.m03195 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; +
          Length = 475

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
 Frame = +3

Query: 174 YAFDLTVGKRLRNNIYTHLVSECL-----LRCISSTIAIGCFSARRG*RL-KREVASLVR 335
           Y  DLT+G    N++      E       L+ + S     CF++    R+ K +  +L  
Sbjct: 81  YVTDLTLGLVHENSLSCATSLEIKPQLFKLKHLKSLTFFNCFTSPI--RIPKEDWINLAS 138

Query: 336 NCTSADYSCNPPIVGE-PENLFSVSHLYALII 428
           N  S ++  NP ++GE PE + S++ L +L++
Sbjct: 139 NLESLEFRSNPGLIGELPETIGSLTKLKSLVV 170


>At5g49950.1 68418.m06185 embryogenesis-associated protein-related
           contains weak similarity to Embryogenesis-associated
           protein EMB8 (Swiss-Prot:Q40863) [Picea glauca]
          Length = 537

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 164 DYIICVRFDGRKTIEKQYLHSLSIGMP--AEVH 256
           D +IC RF  RK ++K Y   L+IG+   A++H
Sbjct: 259 DLLICDRFINRKLVQKVYDRMLTIGLQGYAQLH 291


>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
           protein low similarity to SP|Q03251 Glycine-rich
           RNA-binding protein 8 (CCR1 protein) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 181

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 240 CLLRCISSTIAIGCFSARRG*RLKREVAS-LVRNCTSADYSCNPP 371
           C + C    +  G  SARR    +R++   L+ +C S D S +PP
Sbjct: 29  CSVSCGRINVGTGVISARR----RRDIGGVLISSCLSTDSSSSPP 69


>At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative
           (CHX16) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 847

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = -2

Query: 423 LTRTNVIH*INFQAPLLSVDC---KSNPPTYSFVQGWQLLALAVSLFVPRNNRL--LWYL 259
           +T   V+  I  +  LL+ D      N    + V  W LLALAVSL   RN+ L  LW L
Sbjct: 216 ITAFGVLARILAELKLLTTDLGRISMNAAAINDVAAWVLLALAVSLSGDRNSPLVPLWVL 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,841,257
Number of Sequences: 28952
Number of extensions: 264609
Number of successful extensions: 469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)