Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0437
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 34 0.094
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 30 1.5
05_03_0086 + 8279518-8280320,8280923-8281844 30 1.5
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409... 30 2.0
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 29 2.7
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 29 2.7
02_03_0344 + 17967687-17968309,17968402-17968744,17970285-179704... 29 2.7
12_02_1163 - 26617450-26617550,26617643-26617744,26618606-26618732 29 4.7
12_01_0057 + 489788-490882,490891-492207 29 4.7
11_01_0057 + 434293-436698 29 4.7
10_08_0127 - 15010125-15011068,15011328-15011835 29 4.7
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 29 4.7
04_04_1080 - 30674122-30674204,30674842-30674913,30675261-306753... 29 4.7
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 29 4.7
10_08_0188 - 15596062-15597084,15597513-15597791 28 6.2
10_01_0360 - 3970796-3971248,3972080-3972436 28 6.2
05_05_0138 + 22644263-22644460,22644617-22644711,22645786-226459... 28 6.2
05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117 28 6.2
02_03_0345 + 17973509-17974131,17974207-17974537,17974624-179749... 28 6.2
12_02_1208 - 27016400-27017176 28 8.2
09_06_0363 - 22551848-22552915 28 8.2
09_02_0468 - 9608922-9610061 28 8.2
07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253 28 8.2
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 8.2
04_04_0702 + 27383876-27384862 28 8.2
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 28 8.2
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 34.3 bits (75), Expect = 0.094
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +3
Query: 117 PASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTIS 260
PA QP Q + ++ + PT+ + ++S R + SS+P +ST ++++
Sbjct: 143 PAPQPVQPQQQLVSPVAAPTSSSSSSSDRSSGSSKPARATSTQAMSVT 190
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +3
Query: 234 SSTLGVTISGVAALHTWTTGDTHAAFKLSLDSPQTSSSTGDTHAAFKL--SLDSPQASSS 407
SST +SG H + +G SL+ + +GD++AAF + S SP S+
Sbjct: 3 SSTKSDLMSGSPDGHGYFSGQRGLYSAASLERSASFRESGDSYAAFPVSGSSRSPAVDSA 62
Query: 408 TGPCKL-ISARTTLIKKKMTRPSVSE 482
T L + RTT ++ K +R V +
Sbjct: 63 TLLQSLAMDLRTTTLEPKTSRLDVKK 88
>05_03_0086 + 8279518-8280320,8280923-8281844
Length = 574
Score = 30.3 bits (65), Expect = 1.5
Identities = 28/97 (28%), Positives = 46/97 (47%)
Frame = +3
Query: 111 SKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTISGVAALHTWTT 290
SKP ++P +H S TA P P TA+ +++ T G++ G +S +L + ++
Sbjct: 42 SKPKNKP--NHHSDKTANPPPQRPETTAALVTTTAAAATAGTNR-GEAVSN-GSLDSISS 97
Query: 291 GDTHAAFKLSLDSPQTSSSTGDTHAAFKLSLDSPQAS 401
G T + SL+S T ++ T S S AS
Sbjct: 98 GSTRSN---SLESSSTGAAAAPTVLTTSASTASVSAS 131
>03_05_0510 +
25039408-25039455,25040627-25040641,25040832-25040991,
25041116-25041192,25041324-25042528,25042537-25042621,
25043068-25043130,25043207-25043263,25043299-25043361,
25043560-25043643,25043730-25044320,25044535-25044663
Length = 858
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +3
Query: 210 SSSQPTTGSSTLGVTISGVAALHTWTTGDTHAAFKLSLDSPQTSSSTGDTHAAFKLSLDS 389
SSS P+ G L + A + + D H AF+ ++P ++SST AA L S
Sbjct: 726 SSSCPSIGPGGLPPSSRAPAEVVVASPLDEHVAFRGGFNTPPSASSTNAAAAAKLPPLPS 785
Query: 390 PQASSST 410
P + T
Sbjct: 786 PTSPLQT 792
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 153 LTALPGPTARNFTASSRRNSSSQPT 227
+ A+PGPT+RN NSSS P+
Sbjct: 510 IPAIPGPTSRNVPMEENSNSSSIPS 534
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 264 VAALHTWTTGDTHAAFK-LSLDSPQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISART 440
VAA+ WT G+ ++ K L +D S A FK + P +++ +G K + T
Sbjct: 189 VAAMLRWTAGNESSSVKLLPVDVSNGSKVASSKGAVFKRGAE-PNSNNKSGSTKWDLSAT 247
Query: 441 TLIKKK 458
+K+K
Sbjct: 248 ITVKQK 253
>02_03_0344 +
17967687-17968309,17968402-17968744,17970285-17970410,
17970458-17970642,17970721-17970973
Length = 509
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 266 GSSAHMDYWRHARSIQAQSRLTADFEQHWR--HARSIQAQPR 385
G++++ YWRH R + L+A QH+ H R +A R
Sbjct: 122 GTASYGPYWRHVRRVAVTEILSARRVQHFADVHVREARAMAR 163
>12_02_1163 - 26617450-26617550,26617643-26617744,26618606-26618732
Length = 109
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +3
Query: 66 PAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTL 245
PA S H +S+H + P Q++ + P P T S N S PT +S +
Sbjct: 3 PAPSNYTTTHGKSAHPQQNETPDQENDASAVVQPSPRTNIGTEYSDENMS--PTIATSEV 60
Query: 246 -GVTISGVAALHTWTTG 293
T S V+ T TG
Sbjct: 61 RNETPSNVSIPSTIVTG 77
>12_01_0057 + 489788-490882,490891-492207
Length = 803
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 151 DSPRFLVLRHATSLPHHAATVHRSPRPDHQRLGSQSPA 264
D+P L++ H T L HAA+V + R G+ +P+
Sbjct: 497 DAPVSLIVLHLTELVGHAASVLKPHRKSRSSCGNPTPS 534
>11_01_0057 + 434293-436698
Length = 801
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 151 DSPRFLVLRHATSLPHHAATVHRSPRPDHQRLGSQSPA 264
D+P L++ H T L HAA+V + R G+ +P+
Sbjct: 495 DAPVSLIVLHLTELVGHAASVLKPHRKSRSSCGNPTPS 532
>10_08_0127 - 15010125-15011068,15011328-15011835
Length = 483
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -3
Query: 391 GESRLSLNAACVSPVLLEVCGESRLSLNAACVSPVVHVCRAATPEIVTPSVDDPVVGCDE 212
G+ R ++ P+ E GE+ L + A V P+ R P ++DP+ G E
Sbjct: 219 GKGRAPRPSSVRFPLKREFAGETTLRIARARVPPLAIEARRVRVTASDPPIEDPLEGVRE 278
Query: 211 L 209
L
Sbjct: 279 L 279
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 117 PASQPQQDHRSRLTALPGPTAR-NFTASSRRNSSSQPTTGSSTLGVTISGVAAL 275
P S R+ + GPT R N ++S ++NSS+ G LGV + V L
Sbjct: 185 PPSSSAPPSRTPSNSSDGPTTRDNISSSKKQNSSTLKIVGFVFLGVVLFIVTVL 238
>04_04_1080 -
30674122-30674204,30674842-30674913,30675261-30675324,
30676358-30676394,30676562-30676675,30676791-30677002,
30677180-30677335,30677556-30678443
Length = 541
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +3
Query: 102 SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSS----SQPTTGSSTLGVTISG 263
S+ +K +S P H + GP + T +R+NS PTTG T G SG
Sbjct: 108 SARAKSSSGPLNKHGEPVKRSSGPQSGGVTPMARQNSGPLPPMLPTTGLITSGPITSG 165
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 111 SKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTL 245
S SQPQQ H ++P PT +A ++S P S +
Sbjct: 393 SSGGSQPQQTHPITKPSVPAPTVSGVSAGVSNSASQWPKVTQSDI 437
>10_08_0188 - 15596062-15597084,15597513-15597791
Length = 433
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 132 QQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTISGVAALHTWTTGD 296
+++ RS A P P+A N + S + ++ T +TL T + VAA +++ D
Sbjct: 320 EEEARSPEIADPHPSAGNKSRSGNGDDATTTTDRQTTLASTTTAVAARDDFSSSD 374
>10_01_0360 - 3970796-3971248,3972080-3972436
Length = 269
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 630 VNIC-SVNRRSECLLFGTCIYALYLENVVSEIQASVNYLAS*MATRPHHSPP 478
V IC R ++G + +L++ V+ +Q+ +NYL ++T SPP
Sbjct: 92 VTICYEAQARLRDPVYGCVAHIFHLQHQVAGLQSELNYLQGHLSTMELPSPP 143
>05_05_0138 +
22644263-22644460,22644617-22644711,22645786-22645949,
22646725-22646970,22647600-22647944,22648516-22648586,
22648676-22648794,22650508-22650637,22650806-22650857,
22650974-22651136,22651244-22651418,22651772-22651942,
22652275-22652388,22652559-22652609
Length = 697
Score = 28.3 bits (60), Expect = 6.2
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = -3
Query: 484 PSETEGRVIFFLISVVRAEISLQGPVLLEAC------GESRLSLNAACVSPVLLEVCGES 323
PS EG + FL+ + A +++Q +LL A G+S+L AA VSP + VCG +
Sbjct: 269 PSLIEG--LSFLVRIFLAFLTVQLKLLLNAILGDPGLGKSQLLQAAAAVSPRGIYVCGNT 326
Query: 322 RLSLNAACVSPVV 284
+ NA VV
Sbjct: 327 --TTNAGLTVAVV 337
>05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117
Length = 193
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Frame = +3
Query: 279 TWTTGDTHAAFKLSLDSPQTSSSTGDTHAAFKLS------LDSPQASSSTGPCKLIS--- 431
T +TG H+ SL S STG +F L L +P+ + GP +S
Sbjct: 36 TPSTGSVHSVVSASLYKASMSISTGANQVSFGLELMTMPFLSTPRKLKNNGPKSNLSYTF 95
Query: 432 --ARTTLIKKKMTRP 470
A+T L K+ M+ P
Sbjct: 96 FFAKTPLYKESMSIP 110
>02_03_0345 +
17973509-17974131,17974207-17974537,17974624-17974985,
17975314-17975572
Length = 524
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 266 GSSAHMDYWRHARSIQAQSRLTADFEQHWR--HARSIQAQPR 385
G++++ YWRH R I L+A QH+ + R ++A R
Sbjct: 123 GTASYGPYWRHIRRIAVTELLSAHRVQHFADVNVREVRALAR 164
>12_02_1208 - 27016400-27017176
Length = 258
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 523 LSCVVDGYPPTSLPSETEGR 464
LSC V G PPT+L T GR
Sbjct: 99 LSCAVSGEPPTTLAEYTLGR 118
>09_06_0363 - 22551848-22552915
Length = 355
Score = 27.9 bits (59), Expect = 8.2
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Frame = +3
Query: 144 RSRLTALP--GPTARNFTASSRRNSSSQPTTGSSTLGVTISGVAALHTWTTGDTHAAFKL 317
+SR A+P +R+ +S+ +SSS + +ISG A ++ + AA +
Sbjct: 3 KSRSDAVPVSSVASRSRRSSATTSSSSSSSRRPGPASSSISGSTASAASSSSSSLAAARA 62
Query: 318 SLDSPQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISARTTLIKKKMTRP 470
SL P + A L +S+ PC L L + + P
Sbjct: 63 SLPDPPVLYPFQEVAGATNNFLAKRAPASTYWPCTLRGRHAALFQLRRAPP 113
>09_02_0468 - 9608922-9610061
Length = 379
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 145 AADSPRFLVLRHATSLPHHAATVHRSPRPDHQR 243
+ DSPR+ R S+P T+ RSPR +R
Sbjct: 77 SVDSPRWRGARRRPSVPDMELTLSRSPRAGEER 109
>07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253
Length = 306
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +3
Query: 126 QPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTISGVAAL 275
QP Q + ++ + PT+ + ++S R + SS+P + T ++++ L
Sbjct: 240 QPVQPQQQLVSPVAAPTSLSSSSSDRSSGSSKPARATLTQAMSVTAAMDL 289
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 74 LADKSTSLTVVPQQASIA-ASTGPSQPTHRASW 169
LAD T P+ SI AST PSQ H A W
Sbjct: 1036 LADFVAEWTPAPETVSIPEASTDPSQLPHTAHW 1068
>04_04_0702 + 27383876-27384862
Length = 328
Score = 27.9 bits (59), Expect = 8.2
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Frame = +3
Query: 165 PGPTARNFTASS----RRNSSSQPTTGSSTLGVTISGVAALHTWTTGDTHAAFKLSLDSP 332
P P A + AS+ +R S P G +GV V + + ++ S D+
Sbjct: 211 PPPPAHSAAASTTNKRKRQPSEDPDDGVEVIGVVSKAVKTEAPTSNSSSLSSSLTSRDTT 270
Query: 333 QTSSSTGDTHAAFKLSLDSPQASSS 407
+SS G HA + SP SS
Sbjct: 271 PATSSAGAEHAG-AAAESSPATPSS 294
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 19 PSDSSSAHQELRLPQSPHSRR*KHVIDSRPTASQHRSLNRTIA 147
PSD + H+ P+ PH+RR V +R R+L+R A
Sbjct: 1215 PSDPEAGHEGAPCPRRPHARR---VAGAREIGRTARTLHRLAA 1254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,054,965
Number of Sequences: 37544
Number of extensions: 449908
Number of successful extensions: 1760
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1753
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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