Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0437
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.6  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   3.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.9  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   4.9  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   6.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   6.4  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
 Frame = +3

Query: 189 TASSRRNSSSQPTTGSSTLGVTISGVAALHTWTTGDTHA-AFKLSLD-SPQTSSSTGDT- 359
           ++  +RN + QP      L    SG        TG THA  F +++    QT    G T 
Sbjct: 23  SSPKKRNKNPQPKNAVCALNELKSGAVYKVVDQTGPTHAPIFTIAVQIDGQTYEGKGRTK 82

Query: 360 ----HAAFKLSL 383
               HAA +L+L
Sbjct: 83  KMAKHAAAELAL 94


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 165 PGPTARNFTASSRRNSSSQPTTGSSTLG 248
           P P  R  +A S   SSS P  G++  G
Sbjct: 511 PSPNPRIASAPSSSTSSSPPAKGAAAAG 538



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 62  NPRILADKSTSLTVVPQQASIAASTGPSQ 148
           NPRI +  S+S +  P     AA+  PS+
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 196 HHAATVHRSPRPDHQRLGSQS 258
           HH   VHR  +P++  L S++
Sbjct: 26  HHNGVVHRDLKPENLLLASKA 46


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 514 VVDGYPPTSLPSETEGRVIFFLISVVRAEISLQGPVL 404
           VV+  PPTSL     G+ + F + +V   I +   VL
Sbjct: 293 VVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVL 329


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 514 VVDGYPPTSLPSETEGRVIFFLISVVRAEISLQGPVL 404
           VV+  PPTSL     G+ + F + +V   I +   VL
Sbjct: 293 VVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVL 329


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 423 ACKGQCCSKPAVSRG*A*MLRACRQCCSKS 334
           AC+G+C S   VS      +     CC +S
Sbjct: 52  ACRGRCSSYLQVSGSKIWQMERSCMCCQES 81


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -3

Query: 454 FLISVVRAEISLQGPVLLEACGESRLSLNAACVSPVLLEVCGESRLS 314
           ++I ++           L  CG + ++     +SP+L  VC ++RL+
Sbjct: 28  YVIGLMNTMTHTTNAFCLPFCGPNVINPFFCDMSPLLSLVCADTRLN 74


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 196 HHAATVHRSPRPDHQR 243
           HH    HR  R D++R
Sbjct: 156 HHGMAYHRGHRKDYER 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,787
Number of Sequences: 438
Number of extensions: 4001
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)