Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0437
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40950.1 68415.m05056 bZIP transcription factor family protei... 36 0.034
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 34 0.10
At1g69295.1 68414.m07947 beta-1,3-glucanase-related low similari... 33 0.14
At3g51640.1 68416.m05663 expressed protein 32 0.32
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 32 0.42
At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family pr... 31 0.56
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i... 31 0.56
At3g51650.1 68416.m05664 expressed protein 30 1.3
At4g17330.1 68417.m02600 agenet domain-containing protein contai... 29 2.2
At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2)... 29 3.0
At4g16670.1 68417.m02518 expressed protein 29 3.9
At2g34830.1 68415.m04276 WRKY family transcription factor 29 3.9
At4g23360.1 68417.m03369 expressed protein predicted proteins, A... 28 5.2
At1g62920.1 68414.m07104 expressed protein ; expression supporte... 28 5.2
At5g38560.1 68418.m04662 protein kinase family protein contains ... 28 6.8
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 28 6.8
At2g33290.1 68415.m04080 SET domain-containing protein (SUVH2) i... 28 6.8
At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family... 28 6.8
At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family... 28 6.8
At1g32120.1 68414.m03952 expressed protein contains Pfam profile... 28 6.8
At1g17210.1 68414.m02097 expressed protein distantly related to ... 28 6.8
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 27 9.0
At4g27860.1 68417.m04000 integral membrane family protein contai... 27 9.0
>At2g40950.1 68415.m05056 bZIP transcription factor family protein
similar to AtbZIP transcription factor GI:17065880 from
[Arabidopsis thaliana]; contains Pfam profile: bZIP
transcription factor PF00170
Length = 721
Score = 35.5 bits (78), Expect = 0.034
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = +3
Query: 27 FIFSASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRR 206
F F S T IPA + + A H +++ Q ++ R LPG + N T +R
Sbjct: 592 FQFDVSSTSGAIIPAATNVSAEHGKNTTDTHKQQNRRILRGLPIPLPG-SDFNLTKEHQR 650
Query: 207 NSSSQPTTGSSTLGVTI 257
NSSS+ +S++ V++
Sbjct: 651 NSSSKEIKPASSMVVSV 667
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 33.9 bits (74), Expect = 0.10
Identities = 44/137 (32%), Positives = 58/137 (42%), Gaps = 4/137 (2%)
Frame = +3
Query: 18 TF*FIFSASRTPATTIPAFSQIKARH*QSSHSKPA-SQPQQDHRSRLTALPGPTARNFTA 194
+F F SAS TPA+T P+F A +S S PA S + +A PG + F
Sbjct: 90 SFGFGSSASVTPASTTPSFGFGTA----ASSSAPAPSLFGSSTTNASSAAPGSSPFGFVT 145
Query: 195 SSRRNSSSQPTTGSSTLGVTISGVAALHTWTTGDTHAAFKLSL--DSPQTSSSTGDTHAA 368
SS +SS T SS G S A + G A+ L SP S+ A+
Sbjct: 146 SS---ASSTATPSSSLFGAPASSAATPSSSPFGAAPASGSTPLFGSSPSLFSAPSSASAS 202
Query: 369 -FKLSLDSPQASSSTGP 416
L S A++ST P
Sbjct: 203 NSSLFGASSSAATSTSP 219
>At1g69295.1 68414.m07947 beta-1,3-glucanase-related low similarity
to elicitor inducible beta-1,3-glucanase NtEIG-E76
[Nicotiana tabacum] GI:11071974
Length = 222
Score = 33.5 bits (73), Expect = 0.14
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = +3
Query: 165 PGPTARNFTASSRRNSSSQPTTGSSTLGVTISGVAALHTWTTG----DTHAAFKLSLDSP 332
P TA N S +SS PTTG+ T G SG T TTG T + + P
Sbjct: 95 PPSTASNCLTGS--SSSGTPTTGTPTTGTPTSGTPTTGTPTTGTPTTGTPTSGTPTSGFP 152
Query: 333 QTSSSTGDTHAAFKLSLDSPQASSST 410
T + T+ S P +SSS+
Sbjct: 153 NTGTPNTGTNTGMPNSNGMPTSSSSS 178
>At3g51640.1 68416.m05663 expressed protein
Length = 826
Score = 32.3 bits (70), Expect = 0.32
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +3
Query: 105 SHSKPASQPQQD-HRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTISGVAALHT 281
S KP+ +P++ H+ + P P + N SR +++ QP SS + +S +
Sbjct: 479 SEPKPSREPKKSWHQLFARSTPAPVSSNVNTISRPSTNPQPNVQSSQVPSQVSSIRTFDN 538
Query: 282 WTTGDTHAAFKLSL-DSPQTSSSTG 353
+ + F + + S T+SS G
Sbjct: 539 PISFGLPSPFTIPVYSSGSTTSSLG 563
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 31.9 bits (69), Expect = 0.42
Identities = 26/103 (25%), Positives = 45/103 (43%)
Frame = +3
Query: 213 SSQPTTGSSTLGVTISGVAALHTWTTGDTHAAFKLSLDSPQTSSSTGDTHAAFKLSLDSP 392
SS P T S L ++++ ++ + ++ +S SP +SSS + ++ SP
Sbjct: 430 SSSPDTSSFLLSLSLAADSSSSDSDSSSPDSSSSVS-SSPDSSSSVSSSPDSYSSFSSSP 488
Query: 393 QASSSTGPCKLISARTTLIKKKMTRPSVSEGSDVGG*PSTTQD 521
+SSS S+R + SVS D G S++ D
Sbjct: 489 DSSSSVSSSLFSSSRENSSSPDYSN-SVSSSLDYSGSVSSSSD 530
>At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;annotation temporarily based on
supporting cDNA gi|17224394|gb|AF246291.1|AF246291
Length = 637
Score = 31.5 bits (68), Expect = 0.56
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +3
Query: 168 GPTARNFTASS---RRNSSSQPTTGSSTLGVTISGVAALHTWTTGDTHAAFKLSLDSPQT 338
GP RN S R SS ++G++T+ G+ + H KL LDSP+
Sbjct: 376 GPQFRNCDKQSSFTRWKKSSSSSSGTATVTAPSQGMLKKIIFDVPRVHQKEKLMLDSPEA 435
Query: 339 SSSTGDTHAAFK 374
TG+ HA +
Sbjct: 436 RDETGN-HAVLE 446
>At2g21235.1 68415.m02522 bZIP protein-related similar to
VirE2-interacting protein VIP1 [Arabidopsis thaliana]
GI:7258340, tbZIP transcription factor [Arabidopsis
thaliana] GI:17065884
Length = 550
Score = 31.5 bits (68), Expect = 0.56
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Frame = +3
Query: 117 PASQPQQDHRSRLTALPGPTARNFTASS------RRNSSSQPTTGSSTLGVTISGVAALH 278
PA P R T P PT +FT +S +S P+ S + I ++ H
Sbjct: 42 PAGSPDFSPGPRCTTQPSPTFSDFTQASPSLTSFNNPASFTPSFSFSNIHQMIPTPSSSH 101
Query: 279 TWTTGDTHAAFKLSLDSPQTSSSTGDTHAAFKLSLDSPQASSSTGP 416
+ +A S PQTS S+ T ++F S DS + S+TGP
Sbjct: 102 N-SKASVSSASSSSFYFPQTSPSSCSTPSSF--SPDS-FSHSNTGP 143
>At3g51650.1 68416.m05664 expressed protein
Length = 826
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 105 SHSKPASQPQQD-HRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTISGVAALHT 281
S KP+ +P++ H+ + P P + N SR +++ QP S + +S +
Sbjct: 479 SEPKPSREPRKSWHQLFARSTPAPVSSNVNTISRPSTNPQPNVQISQVPSQVSSIRTFDN 538
Query: 282 WTTGDTHAAFKLSL-DSPQTSSSTG 353
+ + F + + S T+SS G
Sbjct: 539 SISFGLPSPFTIPVYSSGSTTSSLG 563
>At4g17330.1 68417.m02600 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 1058
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +3
Query: 114 KPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTISGVAALHTWTTG 293
KPA +P++ + +P +RN TAS + S G + GV+ G + TT
Sbjct: 912 KPAPKPKEKPGATARIIPRKDSRNTTASDMESDESAENRGPGS-GVSFKG--TVEEQTTS 968
Query: 294 DTH 302
+H
Sbjct: 969 SSH 971
>At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2) /
gibberellin-responsive protein 2 identical to SP|P46688
Gibberellin-regulated protein 2 precursor {Arabidopsis
thaliana}
Length = 99
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 435 VLRLACKGQCCSKPAVSRG*A*MLRACRQCCSK 337
V+++ C G+C + + S LRAC CCS+
Sbjct: 36 VVKIDCGGRCKDRCSKSSRTKLCLRACNSCCSR 68
>At4g16670.1 68417.m02518 expressed protein
Length = 429
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +2
Query: 38 RIKNSGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFI 217
R++ + H+ +A +T++ V + G + AS S HCL +
Sbjct: 157 RVEKAHLHSAVSIASLATAIAAVTASGNQDGFAGSKMSSALASASELLASHCLELAELAG 216
Query: 218 AAHDRIINA 244
A HDR+++A
Sbjct: 217 ADHDRVVSA 225
>At2g34830.1 68415.m04276 WRKY family transcription factor
Length = 427
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 165 PGPTARNFTASSRRNSSS---QPTTGSSTLGVTIS 260
P PT RN A S R+SSS P++ SST T S
Sbjct: 273 PWPTQRNALAGSTRSSSSSSLNPSSKSSTAAATTS 307
>At4g23360.1 68417.m03369 expressed protein predicted proteins,
Arabidopsis thaliana contains Pfam profile PF03080:
Arabidopsis proteins of unknown function; expression
supported by MPSS
Length = 873
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 2 RRNNRNLLIHLQRIKNSGYHNPRILADKSTSLT 100
+R L+H QR+K+ G+ PR K+T+ T
Sbjct: 120 KRTTMEDLMHAQRLKSMGFDGPRPFLTKTTNNT 152
>At1g62920.1 68414.m07104 expressed protein ; expression supported
by MPSS
Length = 260
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 321 LDSPQTSSSTGDTHAAFKLSLDSPQASSSTGPCK 422
L++P+ S+ T ++KL L SP+A + PC+
Sbjct: 81 LENPRCSNQLTSTTTSWKLGLVSPKAQLNQVPCR 114
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 62 NPRILADKSTSLTVVPQQASIAASTGPS 145
+P LA T L VVP++ IA TGP+
Sbjct: 188 DPSTLAPPPTPLPVVPREKPIAKPTGPA 215
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 234 SSTLGVTISGVAALHTWTTGDTHAAFKLSLDSPQTSSSTGDTH 362
S+T+ V G ++H G AF++S+ S +SSS G H
Sbjct: 203 SATISVHSGGSDSMHGHMRGMGMDAFRVSMSSAVSSSSHGSGH 245
>At2g33290.1 68415.m04080 SET domain-containing protein (SUVH2)
identical to SUVH2 [Arabidopsis thaliana] GI:13517745;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH2 (SUVH2) GI:13517744
Length = 651
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 88 AFICENAGIVVAGV-LDALKMNQKVAIVP 5
AFICE AG+VV + + L MN V + P
Sbjct: 519 AFICEYAGVVVTRLQAEILSMNGDVMVYP 547
>At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family
protein contains Pfam domain PF00730: HhH-GPD
superfamily base excision DNA repair protein
Length = 394
Score = 27.9 bits (59), Expect = 6.8
Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 2/130 (1%)
Frame = +3
Query: 102 SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSS--QPTTGSSTLGVTISGVAAL 275
SSH+ P +QP+ + +P T + +ASS S S TT + + V++
Sbjct: 10 SSHTLPPNQPESPNHETPNPIPPETNDDDSASSAGVSGSIVSSTTIEAPQVTELGNVSSP 69
Query: 276 HTWTTGDTHAAFKLSLDSPQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISARTTLIKK 455
T KLS D S H +++ P S KL +RT + +
Sbjct: 70 PTKIPLRPRKIRKLSPDD-DASDGFNPEHNLSQMTTTKPATKS-----KLSQSRTVTVPR 123
Query: 456 KMTRPSVSEG 485
R EG
Sbjct: 124 IQARSLTCEG 133
>At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family
protein contains Pfam domain PF00730: HhH-GPD
superfamily base excision DNA repair protein
Length = 391
Score = 27.9 bits (59), Expect = 6.8
Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 2/130 (1%)
Frame = +3
Query: 102 SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSS--QPTTGSSTLGVTISGVAAL 275
SSH+ P +QP+ + +P T + +ASS S S TT + + V++
Sbjct: 10 SSHTLPPNQPESPNHETPNPIPPETNDDDSASSAGVSGSIVSSTTIEAPQVTELGNVSSP 69
Query: 276 HTWTTGDTHAAFKLSLDSPQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISARTTLIKK 455
T KLS D S H +++ P S KL +RT + +
Sbjct: 70 PTKIPLRPRKIRKLSPDD-DASDGFNPEHNLSQMTTTKPATKS-----KLSQSRTVTVPR 123
Query: 456 KMTRPSVSEG 485
R EG
Sbjct: 124 IQARSLTCEG 133
>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 1206
Score = 27.9 bits (59), Expect = 6.8
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = -3
Query: 535 GICQLSCVVDGYPPTSLPSETEGRVIFFL--ISVVRAEISLQGPVLLEACGESRLSLNAA 362
G+C +S + PTS P + + L + + +L GP++ + C L N+
Sbjct: 1105 GLCVISSIAGAICPTSFPVDLCNGIAMTLQGLWFYQTAFTLYGPMMPQGCS---LKQNSV 1161
Query: 361 CVSPVLLEVCGESRLSLNAACVSPVVHVC 275
V EV GE + + V VC
Sbjct: 1162 VCRSVDSEVSGEFLANFQLFSLVLAVLVC 1190
>At1g17210.1 68414.m02097 expressed protein distantly related to
dentin phosphoryn [Homo sapiens] (GI:4322670)
Length = 958
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +3
Query: 63 IPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTG 233
+P + QS+ + S P ++ +SRL PGP+ + F+ASSR+ S + G
Sbjct: 275 LPNIQDCEEHSAQSARNGCPSGPARN-QSRLQD-PGPSRKQFSASSRKASGNYEVLG 329
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +3
Query: 36 SASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSS 215
S R + P+ + +AR S S+ S+P+ RSR P +R+ S R+
Sbjct: 4 SPQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRG 63
Query: 216 SQPTTGSSTLGVT 254
S+ +TL VT
Sbjct: 64 SEVENPGTTLYVT 76
>At4g27860.1 68417.m04000 integral membrane family protein contains
Pfam PF01988: Integral membrane protein
Length = 611
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 213 SSQPTTGSSTLGVTISGVAALHTWTTGDTHAAFKLSLDSPQTSSSTGDT 359
+S +G+STL V GVA L + H+ +L + P+ ++T D+
Sbjct: 433 TSAAASGASTLNVLALGVANLSSGLLLTVHSLQELINEKPRKQTNTDDS 481
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,542,646
Number of Sequences: 28952
Number of extensions: 334087
Number of successful extensions: 1225
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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