Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0435
         (440 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    54   1e-06
UniRef50_Q8D2I4 Cluster: PurU protein; n=1; Wigglesworthia gloss...    32   4.7  
UniRef50_Q299C0 Cluster: GA10288-PA; n=2; Coelomata|Rep: GA10288...    32   4.7  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 54.0 bits (124), Expect = 1e-06
 Identities = 24/37 (64%), Positives = 28/37 (75%)
 Frame = -2

Query: 130 LLLRWVDELTSQLVVKWLLEPIDIYNVNAPPTLRYKF 20
           LLLRWVDELT+ LV+     P  +Y+VNAPPT RYKF
Sbjct: 155 LLLRWVDELTAHLVLSGYWSPRHLYDVNAPPTSRYKF 191


>UniRef50_Q8D2I4 Cluster: PurU protein; n=1; Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis|Rep:
           PurU protein - Wigglesworthia glossinidia brevipalpis
          Length = 289

 Score = 32.3 bits (70), Expect = 4.7
 Identities = 15/48 (31%), Positives = 30/48 (62%)
 Frame = -2

Query: 184 ENNRKNLTCITLLRKKYILLLRWVDELTSQLVVKWLLEPIDIYNVNAP 41
           ++N K L  I +L+  YI+L +++  LTS  + K++ + I+I++   P
Sbjct: 156 DHNNKILNIIQILKPDYIILAKYMRILTSSFIKKYINKIINIHHSILP 203


>UniRef50_Q299C0 Cluster: GA10288-PA; n=2; Coelomata|Rep: GA10288-PA -
            Drosophila pseudoobscura (Fruit fly)
          Length = 2027

 Score = 32.3 bits (70), Expect = 4.7
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -2

Query: 289  KENPLLINTSLKS*FYRDVN*KRKSLSYRYKFSYYENNRKNLTCITLLRKKYILLLRWVD 110
            KEN +    SL   FY +V+ K   + Y YK         N T      K +  LLRW D
Sbjct: 1285 KENRMACTFSLLQ-FYSEVDLKEMYIRYVYKLRDLHMEFDNYTEAAFTLKLHTELLRWTD 1343

Query: 109  -ELTSQL 92
             EL+ QL
Sbjct: 1344 MELSPQL 1350


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 378,095,123
Number of Sequences: 1657284
Number of extensions: 6178117
Number of successful extensions: 12291
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12290
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22340008747
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)