Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0435
         (440 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    27   0.060
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    27   0.060
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   1.3  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   5.2  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 27.5 bits (58), Expect = 0.060
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 247 FYRDVN*KRKSLSYRYKFSYYENNRKN 167
           +Y++ N  +K+  Y  K  YYENN  N
Sbjct: 418 YYQNENMLQKNAEYSGKVGYYENNHYN 444


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 0.060
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 247 FYRDVN*KRKSLSYRYKFSYYENNRKN 167
           +Y++ N  +K+  Y  K  YYENN  N
Sbjct: 366 YYQNENMLQKNAEYSGKVGYYENNHYN 392


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 274 VRGFLFALICD-YLGMSPKK 330
           + GFLF LICD YL +  K+
Sbjct: 13  IAGFLFLLICDSYLKIYHKE 32


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory
          receptor candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 82 WLLEPIDIYNVNAPPTLRYK 23
          WL  P  + N   P +LR+K
Sbjct: 7  WLTPPHSLGNTVTPVSLRFK 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,944
Number of Sequences: 336
Number of extensions: 1540
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)