Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0435
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   0.97 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   2.2  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   5.2  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   6.8  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    24   9.0  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = -2

Query: 340 YPIIFLD-SFR-GSHKLAQKENPLLI 269
           +PI  LD S R GS+KL++KENP LI
Sbjct: 893 FPIDNLDMSMRTGSYKLSEKENPKLI 918


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 187 YENNRKNLTCITLLRKKYILLLRW 116
           +EN  KNL C T +R+  + LL W
Sbjct: 323 WENEMKNLDCETQVRQLALYLLCW 346


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 199 KFSYYENNRKNLTCITLLRKKYILLLRWVDELTSQ 95
           K+ Y+ N  K+   ++ LR+KY    RW+  L  Q
Sbjct: 450 KWIYFTN--KSPEMVSYLREKYFTPSRWISHLNFQ 482


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 178 NRKNLTCITLLRKKYILLLRW--VDELTSQLVVKWLLE 71
           N  NLTC+ LL K     + W  +DE   QL  + ++E
Sbjct: 73  NHINLTCMLLLYKSKYEYITWDLIDENRFQLFFEKVIE 110


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 20 EFISQSGWRIYVVD 61
          E+IS++GWR+ V D
Sbjct: 21 EYISKAGWRVNVCD 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,932
Number of Sequences: 5004
Number of extensions: 28290
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)