Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0435
         (440 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            26   0.68 
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            26   0.68 
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    22   8.4  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.8 bits (54), Expect = 0.68
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 136  YILLLRWVDELTSQLVVKWLLEPIDIYNVNAPPT 35
            ++L L W  E+  Q  +  L+E +  Y  N P T
Sbjct: 943  HLLHLNWKHEVHRQSTIDVLIEDLHTYTFNPPET 976


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 25.8 bits (54), Expect = 0.68
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 136  YILLLRWVDELTSQLVVKWLLEPIDIYNVNAPPT 35
            ++L L W  E+  Q  +  L+E +  Y  N P T
Sbjct: 944  HLLHLNWKHEVHRQSTIDVLIEDLHTYTFNPPET 977


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 244 YRDVN*KRKSLSYRYKFSYYENNRKNLTCITLLRKKYILLL 122
           +R ++ + KSL Y+ +F +  NNR     + L+  + ++ L
Sbjct: 113 HRALHNEIKSLLYQKRFEHERNNRSREFMLKLIAIRMLVNL 153


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,279
Number of Sequences: 2352
Number of extensions: 6006
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36993357
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)