Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0435
         (440 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65230.1 68414.m07395 expressed protein                             27   4.2  
At5g38270.1 68418.m04613 F-box family protein contains F-box dom...    27   5.6  
At2g47040.1 68415.m05877 pectinesterase family protein contains ...    27   5.6  
At4g25750.1 68417.m03707 ABC transporter family protein Bactroce...    27   7.4  
At5g12200.1 68418.m01431 dihydropyrimidinase / DHPase / dihydrop...    26   9.8  

>At1g65230.1 68414.m07395 expressed protein
          Length = 286

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 9   ARS*NLYLKVGGAFTL*MSMGSSNHLTTSWDVSSSTHLSNKIYFFLS 149
           A S +L +KV   FTL    G       SWD+SSS+ ++ + YF+ S
Sbjct: 166 AVSGDLIVKVKSEFTLNQISGQVFEHEESWDLSSSSPIA-QAYFWTS 211


>At5g38270.1 68418.m04613 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 406

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 190 YYENNRK-NLTCITLLRKKYILLLRWVDELTSQLVVKWL 77
           + E +RK  ++ IT+ R+   +L  W+DE T   VV W+
Sbjct: 156 FVEPSRKVTVSKITITRESRAVL--WIDERTGDFVVAWI 192


>At2g47040.1 68415.m05877 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 595

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -2

Query: 211 SYRYKFSYYENNRKNLTCITLLRKKYILLLRWVDELTSQLVVKWLLEPID-IYNVNAPPT 35
           S+     Y E N +    IT  R  ++ + R   E+    V  W L PI+ I   N P T
Sbjct: 534 SFHKSCRYVEYNNRGPGAITNRRVNWVKIARSAAEVNDFTVANW-LGPINWIQEANVPVT 592

Query: 34  L 32
           L
Sbjct: 593 L 593


>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
           tryoni membrane transporter (white) gene, PID:g3676298
          Length = 577

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 255 FKLVFISKGFSFCANL*LPRNESK 326
           F L+ +S+ F+F A+L LP+N SK
Sbjct: 98  FPLLTVSETFTFSASLLLPKNLSK 121


>At5g12200.1 68418.m01431 dihydropyrimidinase / DHPase /
           dihydropyrimidine amidohydrolase / hydantoinase (PYD2)
           identical to dihydropyrimidine amidohydrolase (PYD2)
           [Arabidopsis thaliana] GI:28194047; similar to SP|Q9EQF5
           Dihydropyrimidinase (EC 3.5.2.2) (DHPase) (Hydantoinase)
           (DHP) {Mus musculus}; contains Pfam profile PF01979:
           Amidohydrolase family
          Length = 531

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 416 HAMXRKPIIKGQCPIARVR*APHINIP 336
           HA+ R P+++G+     +R A  IN P
Sbjct: 251 HALSRPPVLEGEATARAIRLARFINTP 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,153,420
Number of Sequences: 28952
Number of extensions: 136505
Number of successful extensions: 290
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)